Alternatives and similar repositories for greengenes2

Users that are interested in greengenes2 are comparing it to the libraries listed below

• escamero / mirlyn
  ☆12Updated last year
• smangul1 / MiCoP
  MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.
  ☆15Updated 3 years ago
• lozuponelab / AMON
  Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…
  ☆23Updated last year
• ewissel / hAMRoaster
  hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance
  ☆22Updated last year
• blekhmanlab / biomehorizon
  Plot microbiome time series in parallel
  ☆26Updated last year
• pollardlab / MIDAS
  Metagenomic Intra-Species Diversity Analysis (MIDAS)
  ☆39Updated last year
• redsnic / WGA-LP
  A pipeline for whole genome assembly
  ☆16Updated 3 years ago
• metasnv-tool / metaSNV
  MetaSNV, a metagenomic SNV calling pipeline.
  ☆20Updated 3 years ago
• quadram-institute-bioscience / dadaist2
  Dadaist2 🟨 Highway to R
  ☆13Updated 7 months ago
• SushiLab / omrgc_v2_scripts
  ☆11Updated last year
• kevsilva / StrainFLAIR
  Strain-level abundances estimation in metagenomic samples using variation graphs
  ☆24Updated 2 years ago
• katcoyte / MK-SpikeSeq
  Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples
  ☆12Updated 4 years ago
• Gibbons-Lab / mbtools
  R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.
  ☆23Updated last year
• EGTortuero / viga
  De novo VIral Genome Annotator
  ☆23Updated last year
• amromics / panta
  Pan-genome Analysis
  ☆12Updated 5 months ago
• gnanibioinfo / EzMAP
  ☆11Updated 4 years ago
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆36Updated 5 months ago
• Chartiza / Microbiome
  scripts for microbiome analysis
  ☆11Updated last year
• jsevo / taxumap
  ☆16Updated 2 years ago
• janepipistrelle / bacterial_GWAS_tutorial
  Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop
  ☆18Updated 9 years ago
• KoslickiLab / YACHT-reproducibles
  A repo to reproduce the experiments in the YACHT manuscript
  ☆11Updated last year
• AnWiercze / NanopoReaTA
  Nanopore Real-Time Analysis Tool
  ☆15Updated last year
• moshi4 / plot_genome_align_fig
  Plot genome alignment figure using progressiveMauve & genoPlotR
  ☆22Updated 3 years ago
• katiesaund / hogwash
  Three bacterial GWAS methods all rolled into one easy-to-use R package
  ☆22Updated last year
• deweylab / detonate
  DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation
  ☆13Updated 9 years ago
• Shenhav-and-Korem-labs / SCRuB
  ☆32Updated 9 months ago
• nick-youngblut / traitar3
  From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)
  ☆21Updated last year
• gcremers / metascan
  Metabolic scanning and annotation of Metagenomes
  ☆10Updated 6 months ago
• shiraz-shah / VFCs
  Code for de novo discovery of viral families in virome data
  ☆14Updated last year
• deng-lab / viroprofiler
  A containerized bioinformatics pipeline for viral metagenomic data analysis
  ☆37Updated last year