Alternatives and similar repositories for greengenes2:

Users that are interested in greengenes2 are comparing it to the libraries listed below

• escamero / mirlyn
  ☆11Updated 6 months ago
• smangul1 / MiCoP
  MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.
  ☆15Updated 2 years ago
• ewissel / hAMRoaster
  hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance
  ☆22Updated 11 months ago
• metasnv-tool / metaSNV
  MetaSNV, a metagenomic SNV calling pipeline.
  ☆20Updated 2 years ago
• kevsilva / StrainFLAIR
  Strain-level abundances estimation in metagenomic samples using variation graphs
  ☆25Updated 2 years ago
• quadram-institute-bioscience / dadaist2
  Dadaist2 🟨 Highway to R
  ☆13Updated last month
• lozuponelab / AMON
  Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…
  ☆21Updated 10 months ago
• SushiLab / omrgc_v2_scripts
  ☆11Updated last year
• KasperSkytte / mmgenome2
  Tools for extracting individual genomes from metagenomes
  ☆17Updated last year
• Shenhav-and-Korem-labs / SCRuB
  ☆28Updated last month
• gnanibioinfo / EzMAP
  ☆10Updated 3 years ago
• FEI38750 / MTD
  MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
  ☆16Updated 9 months ago
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆37Updated 3 months ago
• EGTortuero / viga
  De novo VIral Genome Annotator
  ☆21Updated 5 months ago
• biobakery / waafle
  http://huttenhower.sph.harvard.edu/waafle
  ☆11Updated 2 months ago
• SegataLab / cmseq
  Set of utilities on sequences and BAM files
  ☆26Updated 3 years ago
• lmlui / Jorg
  MAG Circularization Method
  ☆33Updated 2 years ago
• redsnic / WGA-LP
  A pipeline for whole genome assembly
  ☆16Updated 2 years ago
• ablab / metaGT
  Pipeline for metagenome and metatranscriptome joint assembly
  ☆20Updated last year
• nick-youngblut / traitar3
  From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)
  ☆22Updated 7 months ago
• aweimann / traitar
  ☆22Updated last year
• KoslickiLab / YACHT-reproducibles
  A repo to reproduce the experiments in the YACHT manuscript
  ☆11Updated last year
• KoslickiLab / fmh-funprofiler
  A functional profiler for metagenomes using FracMinHash
  ☆15Updated last week
• janepipistrelle / bacterial_GWAS_tutorial
  Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop
  ☆18Updated 9 years ago
• gcremers / metascan
  Metabolic scanning and annotation of Metagenomes
  ☆10Updated 2 months ago
• moshi4 / plot_genome_align_fig
  Plot genome alignment figure using progressiveMauve & genoPlotR
  ☆21Updated 2 years ago
• statdivlab / happi
  A Hierarchical Approach to Pangenomics Inference
  ☆11Updated 10 months ago
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆27Updated last year
• broadinstitute / StrainGE
  strain-level analysis tools
  ☆34Updated 4 months ago
• deng-lab / viroprofiler
  A containerized bioinformatics pipeline for viral metagenomic data analysis
  ☆28Updated 6 months ago