Alternatives and similar repositories for greengenes2

Users that are interested in greengenes2 are comparing it to the libraries listed below

• smangul1 / MiCoP
  MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.
  ☆15Updated 3 years ago
• quadram-institute-bioscience / dadaist2
  Dadaist2 🟨 Highway to R
  ☆13Updated 10 months ago
• katcoyte / MK-SpikeSeq
  Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples
  ☆12Updated 4 years ago
• kevsilva / StrainFLAIR
  Strain-level abundances estimation in metagenomic samples using variation graphs
  ☆24Updated 3 years ago
• thh32 / Protologger
  Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights
  ☆16Updated 2 months ago
• lozuponelab / AMON
  Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…
  ☆25Updated 2 weeks ago
• deweylab / detonate
  DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation
  ☆14Updated 9 years ago
• amromics / panta
  Pan-genome Analysis
  ☆12Updated 8 months ago
• escamero / mirlyn
  ☆13Updated last year
• ewissel / hAMRoaster
  hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance
  ☆22Updated last year
• metasnv-tool / metaSNV
  MetaSNV, a metagenomic SNV calling pipeline.
  ☆20Updated 3 years ago
• redsnic / WGA-LP
  A pipeline for whole genome assembly
  ☆16Updated 3 years ago
• blekhmanlab / biomehorizon
  Plot microbiome time series in parallel
  ☆27Updated 2 years ago
• gnanibioinfo / EzMAP
  ☆11Updated 4 years ago
• davised / get_assemblies
  Download assembly files from NCBI
  ☆13Updated 2 years ago
• janepipistrelle / bacterial_GWAS_tutorial
  Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop
  ☆18Updated 9 years ago
• pollardlab / MIDAS
  Metagenomic Intra-Species Diversity Analysis (MIDAS)
  ☆41Updated last year
• mmpust / raspir
  Raspir, the rare species identifier
  ☆11Updated 2 years ago
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆38Updated last month
• attayeb / snaq
  Qiime2 snakemake pipeline
  ☆20Updated 2 years ago
• SushiLab / omrgc_v2_scripts
  ☆11Updated last year
• Shenhav-and-Korem-labs / SCRuB
  ☆32Updated last year
• katiesaund / hogwash
  Three bacterial GWAS methods all rolled into one easy-to-use R package
  ☆22Updated last year
• SwingOlive / kASA
  kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding
  ☆23Updated 2 years ago
• FEI38750 / MTD
  MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
  ☆17Updated 6 months ago
• JCVenterInstitute / PanGenomePipeline
  PanGenomePipeline
  ☆16Updated last year
• shiraz-shah / VFCs
  Code for de novo discovery of viral families in virome data
  ☆16Updated last year
• nick-youngblut / traitar3
  From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)
  ☆21Updated last year
• songweizhi / BioSAK
  A Swiss-Army-Knife for Bioinformaticians
  ☆14Updated this week
• maxemil / PhyloMagnet
  screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics
  ☆11Updated 5 years ago