segalab / SGVFinderLinks
☆32Updated 2 years ago
Alternatives and similar repositories for SGVFinder
Users that are interested in SGVFinder are comparing it to the libraries listed below
Sorting:
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- R package to predict microbial loads☆16Updated last month
- Batch effects removal for microbiome data via conditional quantile regression☆31Updated 2 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆70Updated 3 years ago
- Course material for the metagenomics course☆44Updated 3 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated 2 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆56Updated 3 years ago
- gutSMASH☆55Updated 7 months ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- ☆56Updated last year
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆30Updated 5 years ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- ☆22Updated this week
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated 7 months ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆55Updated last year
- ☆22Updated 5 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 6 months ago
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 6 years ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Updated 4 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆41Updated 5 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆56Updated 3 months ago
- A general metagenomics data mining system focus on robust microbiome research☆58Updated 10 months ago
- StrainFinder☆28Updated 7 years ago
- Microbiome classification pipeline☆66Updated 2 months ago
- Development version of Easyfig☆99Updated last year
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆61Updated last year
- ☆83Updated last year