segalab / SGVFinderLinks
☆32Updated 2 years ago
Alternatives and similar repositories for SGVFinder
Users that are interested in SGVFinder are comparing it to the libraries listed below
Sorting:
- Analysing Metagenomic Species (MGS)☆42Updated 5 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 3 years ago
- Set of utilities on sequences and BAM files☆26Updated 4 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
- R package to predict microbial loads☆17Updated 3 months ago
- A program for detection of tRNA genes☆78Updated 3 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- ☆21Updated 5 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- gutSMASH☆55Updated 2 months ago
- Batch effects removal for microbiome data via conditional quantile regression☆32Updated 3 years ago
- ☆22Updated last month
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆60Updated last year
- A general metagenomics data mining system focus on robust microbiome research☆59Updated last year
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 11 months ago
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆72Updated 3 years ago
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated 11 months ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Updated 4 years ago
- Course material for the metagenomics course☆47Updated 3 years ago
- Statistical analysis for sparse high-throughput sequencing☆71Updated last year
- Automatically exported from code.google.com/p/prottest3☆38Updated 7 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆56Updated 8 months ago
- FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomi…☆68Updated 9 months ago
- ☆41Updated 4 years ago
- ☆61Updated last year
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆57Updated 3 years ago
- Workflows for metagenomic sequence data processing and analysis.☆16Updated 6 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆62Updated 4 years ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆116Updated last month