segalab / SGVFinder
☆30Updated last year
Related projects ⓘ
Alternatives and complementary repositories for SGVFinder
- ☆21Updated 4 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated last year
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆43Updated last year
- StrainFinder☆27Updated 6 years ago
- ☆25Updated 2 months ago
- ☆18Updated 2 months ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated last year
- Set of utilities on sequences and BAM files☆25Updated 3 years ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆41Updated last year
- OPAL: Open-community Profiling Assessment tooL☆27Updated 2 months ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆68Updated 4 years ago
- ☆45Updated 6 months ago
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆25Updated last month
- GTDB taxonomy taxdump files with trackable TaxIds☆48Updated 6 months ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆47Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆39Updated 4 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 3 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆29Updated last year
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆43Updated 4 years ago
- Analysing Metagenomic Species (MGS)☆41Updated 3 years ago
- Estimate metagenomic coverage and sequence diversity☆46Updated 3 months ago
- Microbial Populations as Clusters Of Gene Transfer☆42Updated 11 months ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated 9 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆46Updated 2 years ago
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆22Updated 2 weeks ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆38Updated last year
- ☆23Updated 6 years ago
- HoCoRT - Remove specific organisms from sequencing reads☆15Updated last year