segalab / SGVFinderLinks
☆32Updated 2 years ago
Alternatives and similar repositories for SGVFinder
Users that are interested in SGVFinder are comparing it to the libraries listed below
Sorting:
- Set of utilities on sequences and BAM files☆26Updated 4 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
- Analysing Metagenomic Species (MGS)☆42Updated 5 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆31Updated 3 years ago
- ☆21Updated 3 weeks ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- ☆21Updated 5 years ago
- Workflows for metagenomic sequence data processing and analysis.☆16Updated 6 years ago
- R package to predict microbial loads☆17Updated 2 months ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 10 months ago
- StrainFinder☆29Updated 7 years ago
- Course material for the metagenomics course☆46Updated 3 years ago
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated 11 months ago
- An ultrafast optimal aligner for mapping large NGS data to large genome databases.☆57Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆42Updated 6 years ago
- gutSMASH☆55Updated 2 months ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- ☆32Updated 11 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆56Updated 7 months ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 5 years ago
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆71Updated 3 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆27Updated 7 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated 2 years ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆36Updated 2 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆57Updated 3 years ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Updated 4 years ago
- ☆61Updated last year
- Automatically exported from code.google.com/p/prottest3☆38Updated 7 years ago