Teaching materials for SymbNET course: from MAGs to GEMs
☆15Jan 8, 2024Updated 2 years ago
Alternatives and similar repositories for SymbNET
Users that are interested in SymbNET are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆20Oct 21, 2022Updated 3 years ago
- Supplementary data for co-occurrence manuscript☆10Dec 19, 2019Updated 6 years ago
- Higher-Order Co-occurrence☆12Nov 9, 2021Updated 4 years ago
- ☆15Oct 14, 2023Updated 2 years ago
- Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models☆12Nov 28, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A set of programs for the taxonomic analysis of genetic sequences☆15Jun 12, 2023Updated 3 years ago
- agent based modelling☆39Aug 28, 2024Updated last year
- SMETANA: a tool to analyse interactions in microbial communities☆73May 6, 2025Updated last year
- Inference of microbial interaction networks from large-scale heterogeneous abundance data☆93Oct 9, 2025Updated 10 months ago
- ☆18Jul 27, 2026Updated 2 weeks ago
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆272May 13, 2026Updated 2 months ago
- CBMPy is a Python based platform for constraint based modelling and analysis.☆20May 26, 2026Updated 2 months ago
- ☆51Jun 11, 2025Updated last year
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆37Jul 15, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Enumerating biosynthetic pathways in metabolic networks☆13Feb 5, 2025Updated last year
- Materials and presentation for the 2022 ISB Microbiome course.☆27Jun 13, 2024Updated 2 years ago
- mergem is a python package and command-line tool for merging, comparing, and translating genome-scale metabolic models☆15Aug 20, 2025Updated 11 months ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆69Mar 16, 2026Updated 4 months ago
- Python package to study microbial communities using metabolic modeling.☆135Jul 20, 2026Updated 3 weeks ago
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆28Nov 19, 2025Updated 8 months ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆25Mar 19, 2023Updated 3 years ago
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆219Jul 31, 2026Updated last week
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆231Mar 24, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Official Edison Lab toolboxes and scripts for analyzing metabolomics data.☆14Mar 8, 2023Updated 3 years ago
- Dynamic Flux Balance analysis in Python☆12Jan 22, 2016Updated 10 years ago
- Minimal Supplying Community Search with constraint-based optimization methods.☆16Jun 17, 2026Updated last month
- This repository contains teaching material for the 3rd International Summer School on Non-Targeted Metabolomics Data Mining for Biomedica…☆12Aug 25, 2023Updated 2 years ago
- ☆63Jul 16, 2026Updated 3 weeks ago
- Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing☆20Jul 26, 2024Updated 2 years ago
- A synthesis of bacterial and archaeal phenotypic trait data☆36Nov 9, 2023Updated 2 years ago
- Python interface for running COMETS simulations and analyzing the results☆16May 19, 2026Updated 2 months ago
- ☆20Apr 24, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Data-Driven Constraint-based analysis☆12Nov 4, 2022Updated 3 years ago
- ☆24Oct 19, 2023Updated 2 years ago
- ☆17Jan 12, 2026Updated 6 months ago
- ☆23Jan 6, 2026Updated 7 months ago
- MAGinator - Accurate SNV calling and profiling of MAGs☆28Mar 23, 2026Updated 4 months ago
- ReFramed: metabolic modeling package☆64Jun 26, 2026Updated last month
- Enzyme-constrained genome-scale models in python☆38Oct 25, 2023Updated 2 years ago