franciscozorrilla / SymbNETLinks
Teaching materials for SymbNET course: from MAGs to GEMs
☆14Updated 2 years ago
Alternatives and similar repositories for SymbNET
Users that are interested in SymbNET are comparing it to the libraries listed below
Sorting:
- ☆56Updated last week
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- ☆24Updated 7 years ago
- ☆63Updated last year
- Binning Virus Genomes from Metagenomes☆70Updated 3 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆46Updated this week
- ☆66Updated last year
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 6 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Updated 4 years ago
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆32Updated 2 years ago
- ☆32Updated last year
- Prophage Activity Estimator☆31Updated last year
- Taxonomic classification of viruses at Order and Family level☆21Updated 2 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆73Updated 6 years ago
- Linking MAGs with 16S rRNA marker genes☆27Updated last year
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆54Updated last year
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆84Updated 2 weeks ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆82Updated 5 months ago
- CLI tool to annotate genes with KOfam☆88Updated 2 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated last month
- ☆17Updated 8 months ago
- Pipelines used in the lab.☆15Updated 10 months ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆71Updated this week
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆58Updated 8 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆86Updated last year
- ☆34Updated 2 years ago
- ☆50Updated 2 weeks ago