Genomic sequence aligner
☆33May 14, 2026Updated this week
Alternatives and similar repositories for Mapper
Users that are interested in Mapper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jan 31, 2025Updated last year
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆35Apr 26, 2026Updated 3 weeks ago
- ☆15Oct 14, 2023Updated 2 years ago
- strain-level analysis tools☆39Oct 21, 2024Updated last year
- An Fast variant calling tool to detection germline and somatic variants☆12Feb 21, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated 2 years ago
- Fast Approximate Pattern Matching using Search Schemes☆16Mar 27, 2026Updated last month
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Nov 1, 2022Updated 3 years ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆25May 11, 2026Updated last week
- Metagenomic Binning Algorithm☆51Jan 16, 2026Updated 4 months ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated 2 months ago
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆31Aug 26, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences☆14May 9, 2026Updated last week
- Viral protein family functional prediction using protein language models☆23Jan 6, 2026Updated 4 months ago
- Aligns short reads using dynamic seed size with strobemers☆197May 12, 2026Updated last week
- K-mer substring space decomposition☆44Sep 1, 2025Updated 8 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆56Apr 29, 2026Updated 3 weeks ago
- A more efficient quality control tool for sequencing data☆33May 27, 2025Updated 11 months ago
- Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint.☆12May 22, 2017Updated 8 years ago
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated 10 months ago
- More scalable dereplication for metagenome assembled genomes☆81Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆83May 13, 2026Updated last week
- A SIMD-accelerated library to compute random minimizers☆43Apr 6, 2026Updated last month
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆88Mar 12, 2026Updated 2 months ago
- Repository for codes, analyses and visualizations for the CAMI II challenges☆14Sep 4, 2023Updated 2 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆52May 8, 2026Updated last week
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆30Jan 15, 2026Updated 4 months ago
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Nov 25, 2024Updated last year
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated 2 years ago
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 2 years ago
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆101Apr 27, 2026Updated 3 weeks ago
- ☆11Jul 3, 2022Updated 3 years ago
- Differential k-mer analysis☆41Jan 29, 2024Updated 2 years ago
- Precise host read removal☆122Apr 13, 2026Updated last month
- A tool for visualising kmers in 2D space.☆14Feb 23, 2025Updated last year