mathjeff / MapperLinks
Genomic sequence aligner
☆33Updated last month
Alternatives and similar repositories for Mapper
Users that are interested in Mapper are comparing it to the libraries listed below
Sorting:
- Automated strain separation of low-complexity metagenomes☆53Updated 4 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆44Updated 2 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 5 months ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated 4 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆56Updated 7 months ago
- ☆42Updated last year
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆23Updated last month
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 2 months ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated last year
- ☆24Updated 9 months ago
- strain-level analysis tools☆39Updated last year
- Discover and annotate the virome☆53Updated last month
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆37Updated 2 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 6 months ago
- Code used to analyse and plot metadata of metagenomic binning tools☆14Updated last year
- Phyling: phylogenetic inference from annotated genomes☆27Updated 3 weeks ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆14Updated 6 months ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆20Updated 3 years ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆14Updated 3 years ago
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Strain Resolution ON Graphs☆48Updated 2 years ago
- A simple-to-use tool for visualizing and comparing genome contexts for numerous genomes☆18Updated last year
- Genomewide Epistasis Analysis on Bacteria☆15Updated 6 months ago