SCeptre is a python package that extends the functionalities of Scanpy to analyze multiplexed single-cell proteomics data.
☆18Mar 18, 2024Updated 2 years ago
Alternatives and similar repositories for SCeptre
Users that are interested in SCeptre are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single cell proteomics data processing☆33Jul 23, 2026Updated 2 weeks ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆15Jan 27, 2023Updated 3 years ago
- Facilitating the use of Deep Visual Proteomics☆17Jan 16, 2026Updated 6 months ago
- DART-ID: retention time alignment and peptide identification confidence updates☆18Mar 17, 2025Updated last year
- Interactive visualisation of CellphoneDB results☆13Jan 15, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆28Jul 13, 2026Updated 3 weeks ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆62Jul 15, 2026Updated 3 weeks ago
- An R package for correcting p-values for multiple hypothesis testing in comparative quantitative omics experiments using permutation-base…☆13Mar 11, 2026Updated 4 months ago
- Python Client Library for the G2P Portal API☆15May 20, 2026Updated 2 months ago
- ☆12Apr 25, 2026Updated 3 months ago
- Quantify and interpret divers of variation in multilevel gene expression experiments☆16Jul 14, 2026Updated 3 weeks ago
- ☆32May 11, 2026Updated 2 months ago
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated last year
- DIA-NN - a universal automated software suite for DIA proteomics data analysis.☆469Jun 30, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Data for analysis of the MoTrPAC endurance exercise training study in 6-month-old rats☆16Aug 13, 2025Updated 11 months ago
- Reproducibility Repo for mvTCR paper☆14Apr 2, 2024Updated 2 years ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆12May 12, 2025Updated last year
- ☆55Dec 5, 2024Updated last year
- ☆12Nov 20, 2023Updated 2 years ago
- ☆10Jul 29, 2020Updated 6 years ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated 2 years ago
- ☆29Sep 4, 2023Updated 2 years ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆12Jun 16, 2021Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆19Mar 8, 2023Updated 3 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Oct 25, 2024Updated last year
- ☆37Nov 29, 2021Updated 4 years ago
- ☆26Feb 2, 2025Updated last year
- ☆15Aug 17, 2023Updated 2 years ago
- ☆16May 23, 2022Updated 4 years ago
- python scripts for proteogenomics analysis☆10Oct 17, 2019Updated 6 years ago
- PTa Analysis TOolkit☆19Jun 9, 2026Updated 2 months ago
- ☆15Feb 12, 2026Updated 5 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- tutorials for spateo package☆21Dec 25, 2024Updated last year
- Information-based dimensionality reduction☆30Dec 14, 2024Updated last year
- ☆19Mar 31, 2023Updated 3 years ago
- Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)☆31May 16, 2025Updated last year
- Trends in single cell papers☆17Sep 23, 2024Updated last year
- Reworked clustering metrics for assessing performance in imbalanced settings☆18Jun 3, 2024Updated 2 years ago
- ☆18Mar 31, 2024Updated 2 years ago