Alternatives and similar repositories for SCeptre

Users that are interested in SCeptre are comparing it to the libraries listed below

• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆51Updated 8 months ago
• SchubertLab / mvTCR
  ☆56Updated last year
• DendrouLab / panpipes
  Multi-modal single cell analysis pipelines
  ☆62Updated last month
• zhouzilu / cTPnet
  cTPnet Package
  ☆27Updated 3 years ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆99Updated last year
• YDaiLab / scRegulate
  Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data
  ☆29Updated last month
• theislab / multimil
  Weakly supervised learning uncovers phenotypic signatures in single-cell data
  ☆38Updated last month
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆65Updated this week
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆69Updated 2 months ago
• JEFworks-Lab / veloviz
  RNA-velocity informed embeddings for visualizing cellular trajectories
  ☆44Updated 3 years ago
• immunogenomics / TiRP
  code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm.…
  ☆13Updated 11 months ago
• wanglab-broad / CAST
  CAST package
  ☆42Updated last year
• omnideconv / omnideconv
  Unified access to several second-generation deconvolution methods
  ☆88Updated 2 weeks ago
• theislab / cross_system_integration
  ☆13Updated 4 months ago
• loosolab / scanpro
  A modular tool for proportion analysis in single-cell sequencing data
  ☆24Updated 4 months ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆67Updated 6 months ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆31Updated 10 months ago
• cantinilab / HuMMuS
  Molecular interactions inference from single-cell multi-omics data
  ☆30Updated this week
• Roy-lab / scMTNI
  ☆31Updated 5 months ago
• Matrisome / MatrisomeAnalyzeR
  An R package for ECM molecule annotation, classification, and analysis
  ☆14Updated last year
• lanagarmire / Asgard
  ☆45Updated 2 years ago
• raphael-group / CalicoST
  Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics
  ☆45Updated 5 months ago
• Banovich-Lab / Spatial_PF
  ☆34Updated 2 months ago
• WanluLiuLab / scAtlasVAE
  ☆40Updated 6 months ago
• potulabe / symphonypy
  Port of symphony algorithm of single-cell reference atlas mapping to Python
  ☆33Updated last month
• theislab / scTab
  ☆62Updated last year
• mcgilldinglab / UNAGI
  UNAGI: deep generative AI for virtual disease and unsuperivsed in-silico perturbations.
  ☆48Updated last week
• shuxiaoc / maxfuse
  ☆57Updated last week
• viannegao / ChromaFold
  ☆30Updated last year
• marcovito / sma
  ☆15Updated 2 years ago