bfurtwa / SCeptre
SCeptre is a python package that extends the functionalities of Scanpy to analyze multiplexed single-cell proteomics data.
☆12Updated 8 months ago
Related projects ⓘ
Alternatives and complementary repositories for SCeptre
- R package for the analysis of single-cell immune repertoires☆41Updated last month
- ☆45Updated 3 weeks ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆58Updated 3 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆60Updated 6 months ago
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆56Updated 8 months ago
- Geometry-preserving random sampling☆75Updated 3 weeks ago
- Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.☆21Updated 2 years ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆40Updated last year
- R package for Pathway RespOnsive GENe activity inference☆93Updated last year
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆33Updated 2 weeks ago
- ☆18Updated 2 years ago
- cTPnet Package☆23Updated 2 years ago
- Gene group activity utility functions for Scanpy☆56Updated 3 months ago
- flexible CDR based distance metrics☆55Updated 3 months ago
- Clonotype Neighbor Graph Analysis☆81Updated 2 months ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆75Updated last year
- bioinformatics plotting and tools☆53Updated 5 months ago
- Molecular interactions inference from single-cell multi-omics data☆22Updated 2 weeks ago
- ☆40Updated 10 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆66Updated last year
- ☆48Updated 4 months ago
- Unified access to several second-generation deconvolution methods☆57Updated 2 weeks ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆56Updated 5 months ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated last year
- Using TCR and expression for sequence embedding☆48Updated 3 weeks ago
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆36Updated 2 years ago
- Single cell omics biology annotations☆48Updated 2 months ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆90Updated 3 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆84Updated 4 months ago
- Differential Expression Analysis tool box R lang package for omics data☆40Updated 3 weeks ago