TencentAILabHealthcare / scPROTEINLinks
☆53Updated 8 months ago
Alternatives and similar repositories for scPROTEIN
Users that are interested in scPROTEIN are comparing it to the libraries listed below
Sorting:
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆55Updated last year
- Transformer for One-Stop Interpretable Cell-type Annotation☆143Updated last year
- Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.☆71Updated last month
- Code for evaluating single cell foundation models scBERT and scGPT☆45Updated 11 months ago
- Single-cell biological network inference using a heterogeneous graph transformer☆73Updated 5 months ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆69Updated last year
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆61Updated last year
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆95Updated 4 months ago
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆40Updated 3 weeks ago
- ☆39Updated 2 years ago
- ☆36Updated 2 months ago
- GeneCompass☆84Updated last month
- ☆49Updated 5 months ago
- Modeling complex perturbations with CellFlow☆76Updated this week
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆50Updated 3 years ago
- CLEAR: Self-supervised contrastive learning for integrative single-cell RNA-seq data analysis☆34Updated 2 years ago
- A VGAE-based model to infer transcription factor regulatory network☆27Updated 3 years ago
- ☆10Updated 2 months ago
- Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network☆103Updated 2 years ago
- SIMBA: SIngle-cell eMBedding Along with features☆63Updated 9 months ago
- ☆83Updated 2 years ago
- ☆72Updated 11 months ago
- Computational Optimization of DNA Activity (CODA)☆60Updated 4 months ago
- Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)☆57Updated last year
- ☆68Updated 2 months ago
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆27Updated last week
- Single-Cell (Perturbation) Model Library☆64Updated last week
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆50Updated 6 months ago
- A model developed for the generation of scRNA-seq data☆68Updated 5 months ago
- Implementation of Phenotype prediction from single-cell RNA-seq data using attention-based neural networks (Bioinformatics).☆12Updated last year