☆56Dec 5, 2024Updated last year
Alternatives and similar repositories for scPROTEIN
Users that are interested in scPROTEIN are comparing it to the libraries listed below
Sorting:
- ☆12Sep 29, 2023Updated 2 years ago
- A Deep Learning-Based Model for the integration, cross-dataset cross-modality generation, self augmentation and matched multi-omics simul…☆16Aug 9, 2025Updated 6 months ago
- ☆18Jan 20, 2026Updated last month
- ☆21Jun 17, 2024Updated last year
- ☆18Feb 5, 2025Updated last year
- ☆90Aug 24, 2025Updated 6 months ago
- Pytorch implementation of EpiFoundation☆25Feb 25, 2025Updated last year
- ☆15Aug 17, 2023Updated 2 years ago
- SCeptre is a python package that extends the functionalities of Scanpy to analyze multiplexed single-cell proteomics data.☆18Mar 18, 2024Updated last year
- SPatial INtegration of spatially resolved transcriptomics datasets☆18Mar 14, 2025Updated 11 months ago
- Spatial Cellular Estimator for Tumors☆61Feb 9, 2026Updated 3 weeks ago
- ☆41Jun 24, 2025Updated 8 months ago
- Single cell proteomics data processing☆30Feb 9, 2026Updated 3 weeks ago
- Statistical analysis for spatial omics data☆11Jul 30, 2022Updated 3 years ago
- Single Cell RNA PolyA Site Discovery☆11Jan 28, 2026Updated last month
- Tools for the analysis of heterogeneous tissues☆14Aug 24, 2022Updated 3 years ago
- Detecting and dissecting anomalous anatomic regions in spatial transcriptomics with STANDS☆11Dec 27, 2024Updated last year
- Interactive visualisation of CellphoneDB results☆12Jan 15, 2025Updated last year
- ☆11Nov 12, 2025Updated 3 months ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆82Updated this week
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆40Dec 23, 2025Updated 2 months ago
- CellNavi is a deep learning framework designed to predict genes driving cellular transitions.☆46Mar 4, 2025Updated last year
- A versatile single-cell cross-modality translation method via dual-aligned variational autoencoders☆28Jul 1, 2024Updated last year
- ☆52Oct 9, 2025Updated 4 months ago
- The source code and results for different methods on annotating external testing datsets of human and mouse.☆12Apr 21, 2021Updated 4 years ago
- ☆12Nov 20, 2023Updated 2 years ago
- ☆10Dec 11, 2024Updated last year
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆14Oct 7, 2024Updated last year
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 2 years ago
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆13Oct 17, 2024Updated last year
- Suite of analysis tools for spatial total RNA-sequencing☆12Aug 10, 2023Updated 2 years ago
- Publically accessible code for DIISCO method☆12Oct 15, 2025Updated 4 months ago
- Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…☆16Jun 25, 2025Updated 8 months ago
- Cell clustering and communication network inference for single-cell transcriptomics☆15Sep 18, 2024Updated last year
- R package IReNA☆29Nov 13, 2024Updated last year
- ☆13Sep 30, 2024Updated last year
- Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure☆13Dec 17, 2025Updated 2 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆58Jan 29, 2026Updated last month
- cell type specific, trait-associated gene regulation☆29Mar 31, 2025Updated 11 months ago