DIA-NN - a universal automated software suite for DIA proteomics data analysis.
☆427Feb 5, 2026Updated last month
Alternatives and similar repositories for DiaNN
Users that are interested in DiaNN are comparing it to the libraries listed below
Sorting:
- A cross-platform proteomics data analysis suite☆278Mar 2, 2026Updated last week
- Report processing and protein quantification for MS-based proteomics☆52Jun 29, 2023Updated 2 years ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆128Jan 13, 2026Updated last month
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆33Jan 20, 2026Updated last month
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆60Jan 7, 2026Updated 2 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆69Updated this week
- Proteomics search & quantification so fast that it feels like magic☆274Jan 6, 2026Updated 2 months ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆92Nov 17, 2025Updated 3 months ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆94Updated this week
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆239Feb 26, 2026Updated last week
- This is a collection of minimal code to visualize various aspects of proteomics data.☆82Jan 6, 2022Updated 4 years ago
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆125Feb 12, 2026Updated 3 weeks ago
- R package - MSstats☆92Feb 25, 2026Updated last week
- modular & open DIA search☆104Updated this week
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆150Updated this week
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆35Apr 14, 2025Updated 10 months ago
- Deep learning framework for proteomics☆145Feb 19, 2026Updated 2 weeks ago
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆68Jan 6, 2026Updated 2 months ago
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆85Nov 21, 2025Updated 3 months ago
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆178Updated this week
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆49Feb 10, 2026Updated 3 weeks ago
- The ProteoWizard Library is a set of software libraries and tools for rapid development of mass spectrometry and proteomic data analysis …☆298Updated this week
- ☆14Jan 27, 2022Updated 4 years ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆51Updated this week
- Democratizing ML in proteomics☆50Feb 2, 2026Updated last month
- High quality in silico spectral library generation for data-independent acquisition proteomics☆16Nov 6, 2025Updated 4 months ago
- DeepLC: Retention time prediction for peptides carrying any modification.☆74Updated this week
- PDV: an integrative proteomics data viewer☆61Feb 18, 2026Updated 2 weeks ago
- Open-source C++ and Python module for opening binary timsTOF data files.☆50Feb 28, 2026Updated last week
- ☆28May 20, 2025Updated 9 months ago
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆92Aug 17, 2023Updated 2 years ago
- A list of tools on proteomics using deep learning☆106May 5, 2024Updated last year
- The codebase of the OpenMS project☆566Mar 3, 2026Updated last week
- A modular, python-based framework for mass spectrometry. Powered by nbdev.☆185Apr 19, 2024Updated last year
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆107Updated this week
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆53Feb 19, 2026Updated 2 weeks ago
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆26Oct 2, 2025Updated 5 months ago
- Infrastructure of AlphaX ecosystem☆53Feb 27, 2026Updated last week
- Semi-supervised learning for peptide identification from shotgun proteomics datasets☆144Nov 21, 2025Updated 3 months ago