vdemichev / DiaNNLinks
DIA-NN - a universal automated software suite for DIA proteomics data analysis.
☆391Updated last month
Alternatives and similar repositories for DiaNN
Users that are interested in DiaNN are comparing it to the libraries listed below
Sorting:
- A cross-platform proteomics data analysis suite☆265Updated this week
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆122Updated 4 months ago
- Report processing and protein quantification for MS-based proteomics☆49Updated 2 years ago
- A list of tools on proteomics using deep learning☆106Updated last year
- This is a collection of minimal code to visualize various aspects of proteomics data.☆83Updated 3 years ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆87Updated this week
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆60Updated this week
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆230Updated 3 weeks ago
- MS-cleavable search engine that enables interactomic analysis by identifying tandem mass spectra of cross-linked peptides.☆21Updated 4 months ago
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆120Updated 2 weeks ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆91Updated last week
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆98Updated last month
- Deep learning framework for proteomics☆132Updated 2 months ago
- MS-DAP: downstream analysis pipeline for quantitative proteomics☆39Updated 8 months ago
- Navigation links (and brief descriptions) to my repositories.☆12Updated 4 months ago
- Imputing proteomics data using deep learning models☆31Updated last week
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆77Updated this week
- Infrastructure of AlphaX ecosystem☆49Updated 2 weeks ago
- modular & open DIA search☆88Updated last week
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆81Updated 3 weeks ago
- Proteomics search & quantification so fast that it feels like magic☆258Updated this week
- Rescoring and spectral library generation pipeline for proteomics.☆52Updated 3 weeks ago
- Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/☆287Updated 5 months ago
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆103Updated 2 weeks ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆53Updated this week
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆91Updated 2 years ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆31Updated last month
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆142Updated last month
- Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.☆22Updated 3 years ago
- A tool for summarizing open search results☆16Updated last week