DIA-NN - a universal automated software suite for DIA proteomics data analysis.
☆444Apr 30, 2026Updated last week
Alternatives and similar repositories for DiaNN
Users that are interested in DiaNN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A cross-platform proteomics data analysis suite☆293May 1, 2026Updated last week
- Report processing and protein quantification for MS-based proteomics☆55Jun 29, 2023Updated 2 years ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆131Mar 23, 2026Updated last month
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆61Mar 19, 2026Updated last month
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆33Mar 21, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆93Nov 17, 2025Updated 5 months ago
- Proteomics search & quantification so fast that it feels like magic☆288Apr 21, 2026Updated 2 weeks ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆95Mar 18, 2026Updated last month
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆126Apr 19, 2026Updated 2 weeks ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆83Jan 6, 2022Updated 4 years ago
- R package - MSstats☆97Updated this week
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆75Apr 21, 2026Updated 2 weeks ago
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆243Mar 7, 2026Updated 2 months ago
- modular & open DIA search☆108Apr 14, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Democratizing ML in proteomics☆53Updated this week
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆153Updated this week
- Deep learning framework for proteomics☆151Apr 21, 2026Updated 2 weeks ago
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆39Mar 18, 2026Updated last month
- PDV: an integrative proteomics data viewer☆61Apr 14, 2026Updated 3 weeks ago
- ☆15Jan 27, 2022Updated 4 years ago
- An open-source Python package for dia-PASEF methods with Automated Isolation Design (py_diAID) from the Mann Labs at the Max Planck Inst…☆29Mar 19, 2026Updated last month
- This project is created by the Hao Lab at the Department of Chemistry & Biochemistry, University of Maryland, College Park, MD. This proj…☆33Nov 24, 2024Updated last year
- ☆29May 20, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- High quality in silico spectral library generation for data-independent acquisition proteomics☆21Mar 31, 2026Updated last month
- Open-source C++ and Python module for opening binary timsTOF data files.☆50Apr 22, 2026Updated 2 weeks ago
- An easy-to-use and interactive web application for FragPipe☆13Mar 8, 2026Updated 2 months ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆52May 1, 2026Updated last week
- A modular, python-based framework for mass spectrometry. Powered by nbdev.☆187Apr 19, 2024Updated 2 years ago
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆186May 1, 2026Updated last week
- HUMOS is a web application aimed to help teaching Orbitrap mass spectrometry. HUMOS models a mass spectrum of a peptide mixture allowing …☆11Mar 10, 2025Updated last year
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆87Nov 21, 2025Updated 5 months ago
- The ProteoWizard Library is a set of software libraries and tools for rapid development of mass spectrometry and proteomic data analysis …☆302May 1, 2026Updated last week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- DeepLC: Retention time prediction for peptides carrying any modification.☆75Apr 24, 2026Updated 2 weeks ago
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆70Jan 6, 2026Updated 4 months ago
- A Comet-based, best practices proteomics pipeline.☆39Mar 21, 2024Updated 2 years ago
- MS-DAP: downstream analysis pipeline for quantitative proteomics☆44Jan 25, 2026Updated 3 months ago
- Interpretation of proteomics identification results☆54Mar 21, 2026Updated last month
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆54Updated this week
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆26Apr 13, 2026Updated 3 weeks ago