vdemichev / DiaNN
DIA-NN - a universal automated software suite for DIA proteomics data analysis.
☆337Updated 3 weeks ago
Alternatives and similar repositories for DiaNN:
Users that are interested in DiaNN are comparing it to the libraries listed below
- A cross-platform proteomics data analysis suite☆226Updated this week
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆116Updated 10 months ago
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆209Updated 2 weeks ago
- Report processing and protein quantification for MS-based proteomics☆42Updated last year
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆54Updated last week
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆85Updated 2 weeks ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆82Updated last month
- Deep learning framework for proteomics☆122Updated last week
- This is a collection of minimal code to visualize various aspects of proteomics data.☆75Updated 3 years ago
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆67Updated last week
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆115Updated last week
- MS-DAP: downstream analysis pipeline for quantitative proteomics☆37Updated last month
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆127Updated this week
- Rescoring and spectral library generation pipeline for proteomics.☆42Updated this week
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆79Updated last year
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆86Updated last year
- Proteomics search & quantification so fast that it feels like magic☆243Updated 2 weeks ago
- A list of tools on proteomics using deep learning☆94Updated 11 months ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆30Updated last month
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆136Updated this week
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆87Updated last month
- MS-cleavable search engine that enables interactomic analysis by identifying tandem mass spectra of cross-linked peptides.☆19Updated 5 months ago
- Infrastructure of AlphaX ecosystem☆37Updated 2 weeks ago
- PDV: an integrative proteomics data viewer☆46Updated last week
- R package - MSstats☆82Updated last week
- modular & open DIA search☆67Updated this week
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆63Updated this week
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆64Updated last year
- An introductory course to Python by the Center of Health Data Science (University of Copenhagen)☆17Updated last month
- An open-source Python package for dia-PASEF methods with Automated Isolation Design (py_diAID) from the Mann Labs at the Max Planck Inst…☆20Updated 2 months ago