nitzanlab / scPrismaLinks
scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underlying cyclic signals
☆17Updated last year
Alternatives and similar repositories for scPrisma
Users that are interested in scPrisma are comparing it to the libraries listed below
Sorting:
- ☆15Updated 2 years ago
- Nonnegative spatial factorization for multivariate count data☆59Updated 2 years ago
- CAST package☆40Updated 10 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆60Updated last month
- ☆26Updated last year
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago
- Spatial reconstruction of dissociated single-cell data☆19Updated last year
- ☆45Updated last month
- CellDrift: temporal perturbation effects for single cell data☆13Updated 2 years ago
- ☆50Updated 3 months ago
- Spatial direct messaging detected by bivariate Moran☆27Updated 2 months ago
- ☆40Updated last week
- ☆21Updated 3 years ago
- ☆11Updated 6 years ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 4 years ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆22Updated 2 years ago
- ☆22Updated 3 years ago
- ☆21Updated 5 months ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆29Updated 2 years ago
- End-to-end pipeline for segmenting cell nuclei on histology slides☆16Updated 3 years ago
- ☆59Updated last year
- ☆24Updated last year
- Learning meaningful representations of genes☆19Updated 2 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆26Updated 8 months ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated last year
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆39Updated 2 months ago
- spatial transcriptome, single cell☆69Updated 2 years ago
- Code and example of the D-SPIN framework☆24Updated last month
- Gene regulatory network inference for RNA velocity and pseudotime data☆27Updated last week
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆10Updated 2 years ago