nitzanlab / scPrismaLinks
scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underlying cyclic signals
☆17Updated last year
Alternatives and similar repositories for scPrisma
Users that are interested in scPrisma are comparing it to the libraries listed below
Sorting:
- ☆15Updated 2 years ago
- Nonnegative spatial factorization for multivariate count data☆59Updated 2 years ago
- Spatial reconstruction of dissociated single-cell data☆19Updated last year
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆29Updated 2 years ago
- Learning meaningful representations of genes☆19Updated last month
- ☆28Updated 2 months ago
- Code and example of the D-SPIN framework☆23Updated 3 weeks ago
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Updated 11 months ago
- ☆26Updated last year
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago
- CAST package☆40Updated 9 months ago
- CellDrift: temporal perturbation effects for single cell data☆13Updated 2 years ago
- ☆21Updated 4 months ago
- ☆45Updated last month
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆22Updated 2 years ago
- Bayesian model for RNA velocity estimation of periodic manifolds☆33Updated last year
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆59Updated last week
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 11 months ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆38Updated last month
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆15Updated 10 months ago
- Code for scKINETICS (ISMB 2023)☆21Updated last year
- ☆50Updated 3 months ago
- Multi-modal single cell analysis pipelines☆59Updated last month
- spatial transcriptome, single cell☆69Updated 2 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 4 years ago
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆10Updated 2 years ago
- ☆40Updated last week
- Spatial direct messaging detected by bivariate Moran☆27Updated last month