nitzanlab / scPrisma
scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underlying cyclic signals
☆17Updated 11 months ago
Alternatives and similar repositories for scPrisma:
Users that are interested in scPrisma are comparing it to the libraries listed below
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆51Updated 2 weeks ago
- ☆26Updated last year
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 6 months ago
- CAST package☆32Updated 4 months ago
- ☆15Updated 2 years ago
- Spatial reconstruction of dissociated single-cell data☆17Updated last year
- Nonnegative spatial factorization for multivariate count data☆57Updated last year
- Code for scKINETICS (ISMB 2023)☆21Updated last year
- ☆45Updated last week
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆26Updated last year
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆26Updated 3 years ago
- A set of files to do genomics analysis on python☆18Updated 3 months ago
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆23Updated 4 months ago
- ☆20Updated 2 years ago
- ☆21Updated 2 years ago
- Spatial Single Cell transcriptomic library☆17Updated 2 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆35Updated 3 months ago
- ☆14Updated 2 years ago
- ☆29Updated this week
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆23Updated last year
- CellDrift: temporal perturbation effects for single cell data☆13Updated 2 years ago
- Bayesian model for RNA velocity estimation of periodic manifolds☆32Updated 8 months ago
- ☆42Updated 3 months ago
- ☆14Updated last year
- ☆39Updated this week
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆46Updated 2 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆23Updated 2 months ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆35Updated this week
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆35Updated 2 months ago
- ☆11Updated 6 years ago