scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underlying cyclic signals
☆21Mar 31, 2024Updated 2 years ago
Alternatives and similar repositories for scPrisma
Users that are interested in scPrisma are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆11Sep 20, 2022Updated 3 years ago
- cell type specific, trait-associated gene regulation☆30Aug 5, 2026Updated 3 weeks ago
- ☆35Jul 20, 2026Updated last month
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆71Jul 9, 2026Updated last month
- ☆42Aug 29, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Longitudinal multi-omics analysis identifies responses of megakaryocytes, erythroid cells and plasmablasts as hallmarks of severe COVID-1…☆12Feb 20, 2021Updated 5 years ago
- Maximum mean discrepancy comparisons for single cell profiling experiments☆20Feb 9, 2022Updated 4 years ago
- ☆12Apr 25, 2026Updated 4 months ago
- ☆62Apr 5, 2024Updated 2 years ago
- ☆101Aug 12, 2024Updated 2 years ago
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated last year
- A flexible and fast sgRNA counter from FASTQ Files☆12Jun 17, 2026Updated 2 months ago
- TRUST4 manuscript evaluation☆17Jul 8, 2022Updated 4 years ago
- ☆14Apr 27, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆42Mar 20, 2023Updated 3 years ago
- Reproducibility Repo for mvTCR paper☆14Apr 2, 2024Updated 2 years ago
- Registries for biological ontologies.☆27Aug 3, 2026Updated 3 weeks ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆31Aug 8, 2023Updated 3 years ago
- ☆12Nov 20, 2023Updated 2 years ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated 2 years ago
- ☆19Mar 8, 2023Updated 3 years ago
- Bayesian model for RNA velocity estimation of periodic manifolds☆35Jun 25, 2024Updated 2 years ago
- ☆16May 23, 2022Updated 4 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing☆192Jun 9, 2026Updated 2 months ago
- Annotatability, a method to identify meaningful patterns in single-cell genomics data through annotation-trainability analysis, which est…☆19Jun 23, 2025Updated last year
- ☆15Feb 12, 2026Updated 6 months ago
- Pathway-Regularized Matrix Factorization☆12Apr 6, 2020Updated 6 years ago
- ☆19Mar 31, 2023Updated 3 years ago
- Trends in single cell papers☆17Sep 23, 2024Updated last year
- Reworked clustering metrics for assessing performance in imbalanced settings☆18Jun 3, 2024Updated 2 years ago
- ☆18Mar 31, 2024Updated 2 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆60Aug 13, 2026Updated 2 weeks ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Source code for iDeLUCS. An interactive deep-learning based tool for clustering of genomic sequences☆15Jul 18, 2024Updated 2 years ago
- Toolkit for single-cell DNA methylation analysis.☆50May 25, 2026Updated 3 months ago
- Code repository for the snRNA-seq cross-tissue atlas project☆21Feb 22, 2022Updated 4 years ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆36Jan 4, 2022Updated 4 years ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆30Oct 16, 2021Updated 4 years ago
- ☆23Jan 6, 2026Updated 7 months ago
- Supplementary files and notebooks to recreate figures.☆23Aug 4, 2026Updated 3 weeks ago