nitzanlab / scPrismaLinks
scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underlying cyclic signals
☆19Updated last year
Alternatives and similar repositories for scPrisma
Users that are interested in scPrisma are comparing it to the libraries listed below
Sorting:
- Nonnegative spatial factorization for multivariate count data☆62Updated 2 years ago
- ☆15Updated 2 years ago
- ☆26Updated 2 years ago
- Tutorials on using latest dynamo package☆26Updated last month
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆30Updated 2 years ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 3 years ago
- CellDrift: temporal perturbation effects for single cell data☆13Updated 3 years ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆22Updated last month
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆65Updated this week
- CAST package☆42Updated last year
- spatial transcriptome, single cell☆73Updated 2 years ago
- Spatial reconstruction of dissociated single-cell data☆19Updated 2 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated last year
- ☆41Updated 3 weeks ago
- Code and example of the D-SPIN framework☆24Updated 3 weeks ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- ☆26Updated 10 months ago
- Learning meaningful representations of genes☆21Updated 7 months ago
- Gene regulatory network inference for RNA velocity and pseudotime data☆28Updated 3 months ago
- ☆20Updated 3 years ago
- ☆47Updated 6 months ago
- ☆30Updated 8 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Updated last year
- Reproducibility Repo for mvTCR paper☆13Updated last year
- ☆52Updated 4 months ago
- ☆13Updated 5 months ago
- Code for scKINETICS (ISMB 2023)☆22Updated 2 years ago
- Bayesian model for RNA velocity estimation of periodic manifolds☆34Updated last year
- Information-based dimensionality reduction☆29Updated last year
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆10Updated 3 years ago