ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.
☆30Oct 4, 2021Updated 5 years ago
Alternatives and similar repositories for ScoMAP
Users that are interested in ScoMAP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆150Apr 5, 2024Updated 2 years ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆37Jan 4, 2022Updated 4 years ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆31Oct 24, 2024Updated 2 years ago
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.☆12May 31, 2024Updated 2 years ago
- In-silico doublet annotation for single cell RNA sequencing data☆11Jan 7, 2026Updated 9 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆28Jul 13, 2026Updated 3 months ago
- CCCvelo: Decoding dynamic cell-cell communication-driven cell state transitions in spatial transcriptomics☆13Sep 14, 2026Updated last month
- chromatin Variability Across Regions (of the genome!)☆198May 1, 2026Updated 6 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆27Feb 22, 2025Updated last year
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆31Dec 23, 2019Updated 6 years ago
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆30Mar 2, 2020Updated 6 years ago
- Fast visualization tool for large-scale and high dimensional single-cell data☆80Jun 23, 2026Updated 4 months ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆501Apr 5, 2024Updated 2 years ago
- Repo with analysis code for the vascular atlas paper☆10Nov 22, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆19Apr 15, 2025Updated last year
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆71Apr 5, 2024Updated 2 years ago
- Cellsnake tool main repo☆35Feb 22, 2024Updated 2 years ago
- Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data☆36Dec 15, 2025Updated 10 months ago
- Single Cell RNA Intron-Exon counting☆12May 7, 2020Updated 6 years ago
- TemporalVAE: dual-objective VAE for time prediction in single cells☆13Sep 13, 2025Updated last year
- Sanger Cellular Genetics single-cell ATAC-seq pipeline.☆13Aug 25, 2023Updated 3 years ago
- SUmmarizing Multiple Enrichment analysis Results☆10Nov 14, 2024Updated last year
- The source code and results for different methods on annotating external testing datsets of human and mouse.☆13Apr 21, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Bayesian MCMC matrix factorization algorithm☆74Aug 12, 2026Updated 2 months ago
- ☆19Mar 8, 2023Updated 3 years ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆89Apr 21, 2025Updated last year
- ☆23Sep 8, 2023Updated 3 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Jan 14, 2024Updated 2 years ago
- SingleCellFusion--a tool to integrate single-cell transcriptome and epigenome data☆13Mar 13, 2022Updated 4 years ago
- Multi-omic velocity inference☆125Oct 23, 2024Updated 2 years ago
- ☆54May 18, 2026Updated 5 months ago
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆15Oct 11, 2019Updated 7 years ago
- ☆12Aug 15, 2025Updated last year
- Vaeda method for computational doublet annotation☆21Feb 1, 2026Updated 9 months ago
- This is the alpha version of the CellOracle package☆509Apr 30, 2026Updated 6 months ago
- ☆17Mar 18, 2026Updated 7 months ago
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆649Jun 26, 2025Updated last year
- Data-driven design of context-specific regulatory elements☆10Jun 18, 2024Updated 2 years ago