SlavovLab / DART-IDLinks
DART-ID: retention time alignment and peptide identification confidence updates
☆18Updated 8 months ago
Alternatives and similar repositories for DART-ID
Users that are interested in DART-ID are comparing it to the libraries listed below
Sorting:
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆89Updated 3 weeks ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆122Updated 5 months ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆60Updated 3 weeks ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆81Updated last month
- Fast and flexible semi-supervised learning for peptide detection in Python☆49Updated 9 months ago
- Python framework for Deep Learning in Proteomics☆33Updated this week
- Infrastructure of AlphaX ecosystem☆50Updated this week
- Community-curated tutorials and datasets for ML in proteomics☆55Updated last month
- This is a collection of minimal code to visualize various aspects of proteomics data.☆82Updated 3 years ago
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆77Updated 2 weeks ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆64Updated this week
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆92Updated 3 weeks ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆47Updated 8 months ago
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆104Updated last week
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆35Updated 7 months ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆53Updated this week
- Rescoring and spectral library generation pipeline for proteomics.☆52Updated last month
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆72Updated 2 months ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆98Updated 2 months ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆61Updated last month
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆120Updated this week
- modular & open DIA search☆93Updated this week
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆91Updated 2 years ago
- Python package for investigating the structural context of PTMs☆28Updated 10 months ago
- ☆27Updated 6 months ago
- A python package for fast post translational modification localization, powered by Cython.☆20Updated last year
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆31Updated last year
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆24Updated 2 months ago
- A Python interface to proteomics data repositories☆36Updated 5 months ago
- ☆13Updated last year