DART-ID: retention time alignment and peptide identification confidence updates
☆18Mar 17, 2025Updated last year
Alternatives and similar repositories for DART-ID
Users that are interested in DART-ID are comparing it to the libraries listed below
Sorting:
- A Framework for IMS-MS Raw Data Processing written in Rust and Python.☆19Feb 27, 2026Updated 3 weeks ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆30Feb 12, 2026Updated last month
- An modular and extensible app for visualization of mass spectrometry data and optimization of data acquisition.☆27Mar 17, 2025Updated last year
- SCeptre is a python package that extends the functionalities of Scanpy to analyze multiplexed single-cell proteomics data.☆18Mar 18, 2024Updated 2 years ago
- ☆22Jun 28, 2021Updated 4 years ago
- Package for pooling the results from (dependent) tests☆12Dec 1, 2025Updated 3 months ago
- PGx supports proteogenomic intregration of mass spectrometry (MS) proteomics data with next generation sequencing (NGS) by mapping identi…☆10Jul 9, 2024Updated last year
- DeepLC: Retention time prediction for peptides carrying any modification.☆74Mar 13, 2026Updated last week
- ☆28May 20, 2025Updated 10 months ago
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments☆13Feb 17, 2026Updated last month
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆84Oct 23, 2025Updated 4 months ago
- An R shiny app to explore the influence of the normality and independence assumptions (and their violation) on the validity (i.e. the typ…☆13Aug 24, 2020Updated 5 years ago
- ☆10Jul 29, 2020Updated 5 years ago
- Collisional cross-section prediction for modified and multiconformational peptides☆13Mar 3, 2026Updated 2 weeks ago
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆26Oct 2, 2025Updated 5 months ago
- Nonparametric Analysis of Response Curves from Thermal Proteome Profiling Experiments☆13May 8, 2023Updated 2 years ago
- PepQuery: a targeted peptide search engine☆15May 1, 2024Updated last year
- PoGo is a proteogenomic tool which allows mapping of peptides identified through mass spectrometry to a reference genome through provided…☆12Jul 8, 2021Updated 4 years ago
- Interpretation of proteomics identification results☆53Nov 26, 2025Updated 3 months ago
- python scripts for proteogenomics analysis☆10Oct 17, 2019Updated 6 years ago
- EasyPQP: Simple library generation for OpenSWATH☆11Mar 11, 2026Updated last week
- Deep proteome inference from peptide profiles☆13Jul 16, 2020Updated 5 years ago
- Integration ribosome profiling - mass spectrometry☆15Nov 4, 2025Updated 4 months ago
- R Markdown thesis template using the bookdown package☆12Dec 8, 2021Updated 4 years ago
- A Grammar of Data Manipulation for Omics Data☆21Aug 31, 2020Updated 5 years ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆63Mar 12, 2026Updated last week
- CNV Rapid Aberration Detection And Reporting☆12Mar 2, 2021Updated 5 years ago
- Test for COVID-19 with the help of OT-2 robots☆12Jun 7, 2020Updated 5 years ago
- ...pay low from Stockholm to Frankfurt.☆15Dec 4, 2022Updated 3 years ago
- Lipid identification software for discovery LC-MS/MS☆12Mar 29, 2019Updated 6 years ago
- TimsR: Easy access to timsTOF Pro data from R.☆12May 11, 2021Updated 4 years ago
- Linux programming environment course in Chinese☆12Nov 19, 2017Updated 8 years ago
- A repository for the winners of the NASA Mars Spectrometry challenge☆10Aug 25, 2023Updated 2 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆19Sep 29, 2025Updated 5 months ago
- EuBIC-MS Developers Meeting 2025 on Computational Mass Spectrometry☆11Nov 8, 2024Updated last year
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆50Feb 10, 2026Updated last month
- ☆13Mar 19, 2024Updated 2 years ago
- metabCombiner R Package: Paired Untargeted Metabolomics Feature Matching & Data Concatenation☆13May 29, 2024Updated last year
- ☆18Jun 3, 2020Updated 5 years ago