SlavovLab / DART-ID
DART-ID: retention time alignment and peptide identification confidence updates
☆15Updated last week
Alternatives and similar repositories for DART-ID:
Users that are interested in DART-ID are comparing it to the libraries listed below
- Fast and flexible semi-supervised learning for peptide detection in Python☆43Updated last month
- ☆13Updated last year
- Rescoring and spectral library generation pipeline for proteomics.☆40Updated this week
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆81Updated last week
- Python package for investigating the structural context of PTMs☆28Updated 2 months ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆47Updated this week
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆42Updated 2 weeks ago
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆21Updated 2 weeks ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆48Updated this week
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆80Updated this week
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆64Updated last year
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆61Updated last month
- This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C. This project aims to…☆24Updated 4 months ago
- A Python interface to proteomics data repositories☆34Updated 3 weeks ago
- ☆59Updated 10 months ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆43Updated this week
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆41Updated this week
- Matthew The's implementation of MaRaCluster☆11Updated 2 years ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆112Updated 9 months ago
- MS/MS prediction for peptides☆22Updated 4 years ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆79Updated last year
- A python package for fast post translational modification localization, powered by Cython.☆19Updated last year
- The Multiplierz Proteomics Library☆24Updated 11 months ago
- ☆36Updated 2 weeks ago
- Community-curated tutorials and datasets for ML in proteomics☆50Updated 4 months ago
- Instrument Application Programming Interface☆45Updated last month
- Deep learning framework for proteomics☆121Updated this week
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆66Updated this week
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆32Updated last month
- Infrastructure of AlphaX ecosystem☆37Updated this week