Alternatives and similar repositories for mvTCR_reproducibility

Users that are interested in mvTCR_reproducibility are comparing it to the libraries listed below

• aertslab / ScoMAP
  ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.
  ☆27Updated 3 years ago
• forrest-lab / NATMI
  NATMI: Network Analysis Toolkit for the Multicellular Interactions
  ☆35Updated 4 years ago
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆40Updated 11 months ago
• AllonKleinLab / cospar
  ☆26Updated last year
• jingshuw / SAVERX
  R package for transfer learning of single-cell RNA-seq denoising
  ☆30Updated 3 years ago
• SchubertLab / mvTCR
  ☆54Updated 10 months ago
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆37Updated 2 years ago
• doraadong / UNIFAN
  Unsupervised cell functional annotation for single-cell RNA-Seq
  ☆22Updated 2 years ago
• shanzha9 / siAgeModel
  ☆12Updated last year
• zhouzilu / cTPnet
  cTPnet Package
  ☆25Updated 3 years ago
• qiaochen / VeloAE
  Low-dimensional Projection of Single Cell Velocity
  ☆28Updated 3 years ago
• ratschlab / scim
  Code for Universal Single-Cell Matching with Unpaired Feature Sets
  ☆21Updated 4 years ago
• caleblareau / asap_reproducibility
  Reproducing all analyses and figures for the ASAP-seq paper
  ☆29Updated 4 years ago
• quadbio / organoid_regulomes
  Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids
  ☆29Updated 2 years ago
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆42Updated 2 years ago
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆42Updated last year
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated 2 years ago
• CostaLab / scopen
  scOpen: single-cell open chromatin analysis via NMF modelling
  ☆28Updated 2 years ago
• WanluLiuLab / scAtlasVAE
  ☆38Updated 2 months ago
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆38Updated 4 years ago
• jcao89757 / TESSA
  Mapping the Functional Landscape of TCR Repertoire
  ☆34Updated 3 years ago
• theislab / moslin
  Code, data and analysis for moslin.
  ☆14Updated 11 months ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 6 months ago
• thomasmaxwellnorman / Perturbseq_GI
  Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"
  ☆58Updated 5 years ago
• shmohammadi86 / SCINET
  ☆18Updated 4 years ago
• ajaynadig / TRADEtools
  ☆29Updated 6 months ago
• sdomanskyi / DigitalCellSorter
  Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:
  ☆24Updated 4 years ago
• davidliwei / PS
  Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…
  ☆17Updated last year
• saezlab / greta
  Benchmark of GRNs using the GRETA pipeline
  ☆28Updated last week
• xiaoyeye / TFvelo
  ☆45Updated last year