Alternatives and similar repositories for mvTCR_reproducibility

Users that are interested in mvTCR_reproducibility are comparing it to the libraries listed below

• aertslab / ScoMAP
  ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.
  ☆27Updated 3 years ago
• jingshuw / SAVERX
  R package for transfer learning of single-cell RNA-seq denoising
  ☆30Updated 3 years ago
• SchubertLab / mvTCR
  ☆53Updated 8 months ago
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆36Updated 2 years ago
• caleblareau / asap_reproducibility
  Reproducing all analyses and figures for the ASAP-seq paper
  ☆29Updated 4 years ago
• WanluLiuLab / scAtlasVAE
  ☆36Updated 3 weeks ago
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆40Updated 9 months ago
• jcao89757 / TESSA
  Mapping the Functional Landscape of TCR Repertoire
  ☆34Updated 3 years ago
• cole-trapnell-lab / Scribe
  Regulatory networks with Direct Information
  ☆16Updated 5 years ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 4 months ago
• JEFworks-Lab / veloviz
  RNA-velocity informed embeddings for visualizing cellular trajectories
  ☆43Updated 2 years ago
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆19Updated last year
• CostaLab / scopen
  scOpen: single-cell open chromatin analysis via NMF modelling
  ☆26Updated 2 years ago
• lcmmichielsen / scHPL
  ☆35Updated 4 months ago
• AllonKleinLab / cospar
  ☆26Updated last year
• mainciburu / WAT3R
  Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)
  ☆21Updated 2 years ago
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆42Updated 10 months ago
• pachterlab / GFCP_2022
  RNA velocity validation
  ☆22Updated 3 years ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆63Updated last week
• qiaochen / VeloAE
  Low-dimensional Projection of Single Cell Velocity
  ☆27Updated 2 years ago
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆42Updated 2 years ago
• doraadong / TraSig
  Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data
  ☆25Updated 2 years ago
• ratschlab / scim
  Code for Universal Single-Cell Matching with Unpaired Feature Sets
  ☆21Updated 4 years ago
• thomasmaxwellnorman / Perturbseq_GI
  Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"
  ☆54Updated 5 years ago
• ajaynadig / TRADEtools
  ☆27Updated 4 months ago
• broadinstitute / single_cell_classification
  Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles
  ☆29Updated 5 years ago
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆37Updated 4 years ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆43Updated last month
• quadbio / organoid_regulomes
  Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids
  ☆28Updated last year
• sdentro / copykat_pipeline
  ☆13Updated last year