SchubertLab / mvTCR_reproducibilityLinks
Reproducibility Repo for mvTCR paper
☆13Updated last year
Alternatives and similar repositories for mvTCR_reproducibility
Users that are interested in mvTCR_reproducibility are comparing it to the libraries listed below
Sorting:
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆42Updated last year
- ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.☆27Updated 4 years ago
- ☆40Updated 5 months ago
- ☆56Updated last year
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 9 months ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- Mapping the Functional Landscape of TCR Repertoire☆35Updated 4 years ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago
- ☆30Updated last year
- Benchmark of GRNs using the GRETA pipeline☆29Updated this week
- Tools for sgRNA calling in direct capture Perturb-seq data☆39Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- ☆34Updated 9 months ago
- cTPnet Package☆27Updated 3 years ago
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆41Updated 4 months ago
- iterative clustering pipeline of big single cell datasets.☆35Updated 3 months ago
- ACTIONet single-cell analysis framework☆44Updated last year
- scOpen: single-cell open chromatin analysis via NMF modelling☆28Updated 2 years ago
- Molecular interactions inference from single-cell multi-omics data☆29Updated last month
- ☆13Updated last year
- code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm.…☆13Updated 10 months ago
- ☆53Updated 2 years ago
- ☆26Updated last year
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆30Updated 2 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆66Updated 5 months ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆22Updated last year
- ☆19Updated 4 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 7 years ago