STOmics / StereoSiTE
Spatial transcriptome analysis in python
☆23Updated 3 months ago
Alternatives and similar repositories for StereoSiTE:
Users that are interested in StereoSiTE are comparing it to the libraries listed below
- Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas☆19Updated 2 years ago
- ☆30Updated 2 years ago
- Code for the spatial transcriptomic paper on IPF lungs☆16Updated 9 months ago
- Construct Tumor Transition Zone Microenvironment☆42Updated 5 months ago
- ☆29Updated last year
- Spatial transcriptomics of heart tissue☆20Updated 2 years ago
- ☆25Updated 10 months ago
- ☆12Updated 2 years ago
- Accurate and fast cell marker gene identification with COSG☆44Updated last month
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆34Updated 2 months ago
- ☆27Updated 2 months ago
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- Single Cell Analysis Operations☆13Updated last month
- ☆38Updated 2 years ago
- ☆21Updated last year
- ☆19Updated 3 years ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆30Updated 2 years ago
- This repository holds the scripts used to analyze the data presented in "A multi-omic single-cell landscape of human gynecologic malignan…☆41Updated last year
- ☆56Updated 9 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆36Updated 4 years ago
- ☆118Updated 3 years ago
- ☆28Updated 2 years ago
- This repository contains all code used for the Human Lung Cell Atlas project.☆49Updated last year
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆52Updated 7 months ago
- ☆22Updated 5 months ago
- ☆41Updated 8 months ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆63Updated 2 years ago
- ☆45Updated 3 years ago
- Codes used in pan-T cell analysis☆58Updated 2 years ago