Alternatives and similar repositories for StereoSiTE

Users that are interested in StereoSiTE are comparing it to the libraries listed below

• yqq-chen / CRC_ICB
  ☆32Updated last year
• Yelab2020 / Cottrazm
  Construct Tumor Transition Zone Microenvironment
  ☆49Updated 5 months ago
• christophhmayr / 2023_Mayr
  Code for the spatial transcriptomic paper on IPF lungs
  ☆20Updated last year
• Lan-lab / sc-GC
  ☆31Updated 3 years ago
• Chuxj / CRC-atlas
  ☆32Updated last year
• BGI-DEV-REG / ARTISTA
  Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas
  ☆21Updated 3 years ago
• teresho4 / scRNA-seq_atlas_Hs_PBMC_aging
  ☆17Updated 2 years ago
• Coolgenome / PDAC
  ☆24Updated 10 months ago
• KramannLab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆28Updated 3 years ago
• aliceygao / pan-Fibroblast
  ☆53Updated last year
• lfranzen / spatial-lung-fibrosis
  Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…
  ☆29Updated last year
• Coolgenome / TCM
  Codes used in pan-T cell analysis
  ☆64Updated 2 years ago
• QiangShiPKU / CoVarNet
  ☆50Updated 4 months ago
• yuyang3 / pan-B
  These are scripts for pan-cacner B cells analyses.
  ☆57Updated last year
• ZhuangLab / SpatialBrainAgingCell22
  ☆14Updated 3 years ago
• youqiongye / CRC_scRNAseq
  ☆47Updated 3 years ago
• Sanofi-Public / enact-pipeline
  Repository for ENACT pipeline for end-to-end analysis of Visium HD data
  ☆71Updated 6 months ago
• navinlabcode / CellTrek
  ☆126Updated 3 years ago
• tiroshlab / Spatial_Glioma
  Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper
  ☆53Updated 11 months ago
• aerickso / SpatialInferCNV
  Clone Calling from Visium Spatial Transcriptomics of Cancer samples
  ☆86Updated 3 years ago
• data2intelligence / SpaCET
  Spatial Cellular Estimator for Tumors
  ☆60Updated last week
• Aleksobrad / single-cell-rcc-pipeline
  Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…
  ☆53Updated 4 years ago
• 10XGenomics / HumanColonCancer_VisiumHD
  Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…
  ☆104Updated 6 months ago
• jyyulab / Spotiphy
  Spot pseudo-Imager on top of histology
  ☆43Updated last week
• SiyuanHuang1 / cpplot
  Visualize the results of cell-cell communication analysis
  ☆24Updated 2 years ago
• liziyie / Onco-fetal-CAF-in-HCC
  ☆22Updated 2 years ago
• meta-cancer / scPLC
  Codes for the scPLC project
  ☆71Updated 3 years ago
• kharchenkolab / scITD
  Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition
  ☆62Updated last year
• genecell / COSG
  Accurate and fast cell marker gene identification with COSG
  ☆53Updated 2 months ago
• zhengrongbin / MEBOCOST
  A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data
  ☆78Updated 4 months ago