Alternatives and similar repositories for StereoSiTE:

Users that are interested in StereoSiTE are comparing it to the libraries listed below

• Yelab2020 / Cottrazm
  Construct Tumor Transition Zone Microenvironment
  ☆40Updated 3 months ago
• yqq-chen / CRC_ICB
  ☆28Updated last year
• Lan-lab / sc-GC
  ☆30Updated 2 years ago
• Zhiliang-Bai / Patho-DBiT
  Patho-DBiT is a platform to spatially decode RNA Biology in archival FFPE tissues.
  ☆10Updated 6 months ago
• BGI-DEV-REG / ARTISTA
  Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas
  ☆18Updated 2 years ago
• jlaffy / scalop
  Single Cell Analysis Operations
  ☆13Updated 11 months ago
• Chuxj / CRC-atlas
  ☆24Updated 8 months ago
• teresho4 / scRNA-seq_atlas_Hs_PBMC_aging
  ☆14Updated last year
• KramannLab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆20Updated 2 years ago
• genecell / COSG
  Accurate and fast cell marker gene identification with COSG
  ☆41Updated last year
• Coolgenome / TCM
  Codes used in pan-T cell analysis
  ☆54Updated last year
• Teichlab / Pan_fetal_immune
  Collection of scripts for analysis of pan fetal immune atlas
  ☆26Updated 2 years ago
• yanailab / PanCancer
  Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…
  ☆28Updated 2 years ago
• rohitarorayyc / SpatialTranscriptomics
  Spatial Transcriptomic Analysis of OSCC samples
  ☆23Updated last year
• AllenInstitute / BICCN_M1_Evo
  Analysis for BICCN cross-species primary motor cortex project
  ☆22Updated last year
• bioinfo-biols / SEVtras
  sEV-containing droplet identification in scRNA-seq data (SEVtras)
  ☆24Updated last week
• TencentAILabHealthcare / spatialID
  ☆37Updated 2 years ago
• aet21 / SCENT
  Estimation of Single-Cell Potency with Single Cell Entropy
  ☆39Updated last year
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆42Updated last year
• liziyie / Onco-fetal-CAF-in-HCC
  ☆19Updated last year
• ZhuangLab / SpatialBrainAgingCell22
  ☆12Updated 2 years ago
• youqiongye / CRC_scRNAseq
  ☆45Updated 3 years ago
• ostunilab / PDAC_Nature_2023
  ☆17Updated 11 months ago
• data2intelligence / SpaCET
  Spatial Cellular Estimator for Tumors
  ☆48Updated last week
• maximemeylan / Meylan_et_al_2022
  ☆18Updated 3 years ago
• ma-compbio / GAGE-seq
  Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq
  ☆11Updated 11 months ago
• shyhihihi / MERCI
  MERCI for tracing of mitochondrion transfer between single cancer and T cells
  ☆21Updated 9 months ago
• chloelulu / scMayoMap
  ☆20Updated last year
• xiaoyeye / TFvelo
  ☆44Updated 9 months ago
• aerickso / SpatialInferCNV
  Clone Calling from Visium Spatial Transcriptomics of Cancer samples
  ☆61Updated 2 years ago