Spatial transcriptome analysis in python
☆25Jan 26, 2025Updated last year
Alternatives and similar repositories for StereoSiTE
Users that are interested in StereoSiTE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- StereoMM is a graph fusion model that can integrate gene expression, histological images, and spatial location. And the information inter…☆39Dec 23, 2025Updated 3 months ago
- A Spatial Transcriptomics Geospatial Profile Recovery System Tool through Anchors☆19Jul 24, 2025Updated 8 months ago
- ☆62Jul 23, 2024Updated last year
- Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas☆21Jul 3, 2022Updated 3 years ago
- Repo with analysis code for the vascular atlas paper☆10Nov 22, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆188Sep 18, 2024Updated last year
- luigi based workflow for analysising WGS samples collecting from different source. It will auto clustering, annotating gene or species, a…☆10Nov 28, 2023Updated 2 years ago
- ☆32Jul 29, 2025Updated 8 months ago
- VT3D: a versatile Visualization Toolbox for 3D spatial transcriptomics atlas☆15Nov 6, 2024Updated last year
- Visualizing SingleCell data Using GGplot2☆37Sep 28, 2024Updated last year
- ☆40Nov 17, 2022Updated 3 years ago
- ☆12Nov 6, 2023Updated 2 years ago
- Spatiotemporal modeling of spatial transcriptomics☆333Feb 25, 2026Updated last month
- ☆21Aug 2, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆27Jul 2, 2024Updated last year
- Tools for generating single-cell gene expression data☆34Jun 20, 2025Updated 9 months ago
- ☆22Mar 22, 2023Updated 3 years ago
- ☆19Feb 23, 2022Updated 4 years ago
- A toolkit of spatial transcriptomic analysis.☆275Updated this week
- python API to the CoGAPS NMF package☆19May 19, 2025Updated 10 months ago
- SCeptre is a python package that extends the functionalities of Scanpy to analyze multiplexed single-cell proteomics data.☆18Mar 18, 2024Updated 2 years ago
- tutorials for spateo package☆20Dec 25, 2024Updated last year
- ☆21Dec 23, 2024Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- single-cell Contamination Detection and Correction☆17Jan 15, 2025Updated last year
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆17May 11, 2023Updated 2 years ago
- scType goes spatial: ScType enables fast and accurate cell type identification from spatial transcriptomics data☆11Jul 11, 2024Updated last year
- Dynamical systems methods for RNA velocity analysis☆24May 19, 2021Updated 4 years ago
- BICSEQ2 pipeline for processing CPTAC3 somatic WGS CNA☆16Apr 13, 2021Updated 4 years ago
- End-to-end model for cell segmentation and classification☆22Jan 13, 2025Updated last year
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆30Aug 30, 2019Updated 6 years ago
- Image Processing Package for the Paper "Self-organization and symmetry breaking in intestinal organoid development"☆11Oct 27, 2020Updated 5 years ago
- ☆38Nov 26, 2025Updated 4 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- All kinds of NGS analysis pipeline☆12Oct 10, 2019Updated 6 years ago
- a pipeline for quantification of circular RNA.☆14May 7, 2017Updated 8 years ago
- ☆12Nov 21, 2023Updated 2 years ago
- ☆10Dec 8, 2023Updated 2 years ago
- ☆13Aug 14, 2020Updated 5 years ago
- UniCell Deconvolve Paper☆10Apr 25, 2023Updated 2 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Aug 12, 2022Updated 3 years ago