Spatial transcriptome analysis in python
☆25Jan 26, 2025Updated last year
Alternatives and similar repositories for StereoSiTE
Users that are interested in StereoSiTE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- StereoMM is a graph fusion model that can integrate gene expression, histological images, and spatial location. And the information inter…☆39Dec 23, 2025Updated 8 months ago
- A Spatial Transcriptomics Geospatial Profile Recovery System Tool through Anchors☆19Jul 24, 2025Updated last year
- ☆65Jul 23, 2024Updated 2 years ago
- Code repository for TCAT analyses☆16Sep 26, 2025Updated 11 months ago
- Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas☆21Jul 3, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆200Sep 18, 2024Updated 2 years ago
- Repo with analysis code for the vascular atlas paper☆10Nov 22, 2024Updated last year
- luigi based workflow for analysising WGS samples collecting from different source. It will auto clustering, annotating gene or species, a…☆10Nov 28, 2023Updated 2 years ago
- ☆32May 11, 2026Updated 4 months ago
- VT3D: a versatile Visualization Toolbox for 3D spatial transcriptomics atlas☆14Nov 6, 2024Updated last year
- ☆13Apr 16, 2026Updated 5 months ago
- Visualizing SingleCell data Using GGplot2☆39Sep 28, 2024Updated last year
- IntelliGenes: AI/ML pipeline for predictive analyses using multi-genomic profiles.☆17Sep 4, 2024Updated 2 years ago
- ☆23Jul 15, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆40Nov 17, 2022Updated 3 years ago
- Tools for generating single-cell gene expression data☆34Jun 20, 2025Updated last year
- Spatiotemporal modeling of spatial transcriptomics☆344Feb 25, 2026Updated 6 months ago
- ☆22Aug 2, 2023Updated 3 years ago
- ☆24Mar 22, 2023Updated 3 years ago
- scType goes spatial: ScType enables fast and accurate cell type identification from spatial transcriptomics data☆12Jul 11, 2024Updated 2 years ago
- ☆20Feb 23, 2022Updated 4 years ago
- A toolkit of spatial transcriptomic analysis.☆291Jul 17, 2026Updated 2 months ago
- SCeptre is a python package that extends the functionalities of Scanpy to analyze multiplexed single-cell proteomics data.☆18Mar 18, 2024Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆23Dec 23, 2024Updated last year
- tutorials for spateo package☆21Dec 25, 2024Updated last year
- single-cell Contamination Detection and Correction☆18Jan 15, 2025Updated last year
- python API to the CoGAPS NMF package☆22Jul 24, 2026Updated last month
- Code used to benchmark Xenium☆86Apr 10, 2026Updated 5 months ago
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆17May 11, 2023Updated 3 years ago
- Dynamical systems methods for RNA velocity analysis☆24May 19, 2021Updated 5 years ago
- This repository will host a (continously updated) list of various deep learning methods used in different stages of spatial transcriptomi…☆45Jul 20, 2026Updated last month
- BICSEQ2 pipeline for processing CPTAC3 somatic WGS CNA☆16Apr 13, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆30Aug 30, 2019Updated 7 years ago
- Image Processing Package for the Paper "Self-organization and symmetry breaking in intestinal organoid development"☆11Oct 27, 2020Updated 5 years ago
- All kinds of NGS analysis pipeline☆12Oct 10, 2019Updated 6 years ago
- ☆13Nov 21, 2023Updated 2 years ago
- a pipeline for quantification of circular RNA.☆14May 7, 2017Updated 9 years ago
- ☆11Dec 8, 2023Updated 2 years ago
- ☆13Aug 14, 2020Updated 6 years ago