theislab / scvelo_notebooksLinks
☆35Updated 3 years ago
Alternatives and similar repositories for scvelo_notebooks
Users that are interested in scvelo_notebooks are comparing it to the libraries listed below
Sorting:
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 6 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 9 months ago
- ☆26Updated last year
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆43Updated last month
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance i…☆44Updated 6 months ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- ☆61Updated 4 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- ☆47Updated 3 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆87Updated 3 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆64Updated 2 months ago
- ACTIONet single-cell analysis framework☆42Updated last year
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆40Updated 11 months ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Context specific and dynamic gene regulatory network reconstruction and analysis☆122Updated last week
- ☆56Updated 3 weeks ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆65Updated 3 weeks ago
- scWGCNA☆61Updated 2 years ago
- Non-parametric density inference for single-cell analysis.☆72Updated 3 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 8 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 3 months ago
- Mapping the Functional Landscape of TCR Repertoire☆34Updated 3 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆20Updated 5 months ago