☆35Nov 29, 2021Updated 4 years ago
Alternatives and similar repositories for scvelo_notebooks
Users that are interested in scvelo_notebooks are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Guided construction of single cell reference☆12Jul 3, 2023Updated 2 years ago
- Code to reproduce analyses and figures for Kamath et al., 2022☆12May 5, 2022Updated 3 years ago
- RNA Velocity generalized through dynamical modeling☆495Feb 25, 2026Updated last month
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Nov 6, 2021Updated 4 years ago
- ☆57May 22, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Transposable element expression at unique loci in single cells with CELLO-seq☆11Jun 17, 2024Updated last year
- ☆13Feb 12, 2026Updated last month
- Scripts to reproduce analyses of tradeSeq paper.☆16Feb 5, 2020Updated 6 years ago
- RNA velocity estimation in R☆196Sep 14, 2023Updated 2 years ago
- ☆20May 30, 2022Updated 3 years ago
- ☆13Mar 29, 2024Updated last year
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆20Nov 17, 2024Updated last year
- ☆13Dec 7, 2020Updated 5 years ago
- Trends in single cell papers☆17Sep 23, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Single-cell Transposable Element Locus Level Analysis of scRNA Sequencing☆21Oct 28, 2025Updated 4 months ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆141Dec 25, 2021Updated 4 years ago
- RNA velocity estimation in Python☆174Oct 7, 2025Updated 5 months ago
- Code and scripts used in analysis of snRNAseq cerebellar cortex atlas☆12Oct 11, 2021Updated 4 years ago
- ☆21Nov 15, 2020Updated 5 years ago
- ☆19Sep 29, 2021Updated 4 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- Supplementary data for Petti, et al 2019 scRNA mutation publication☆16Feb 1, 2023Updated 3 years ago
- RAGE-seq scripts☆18Aug 30, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Toolbox of the Human Neural Organoid Cell Atlas☆30Updated this week
- SCeptre is a python package that extends the functionalities of Scanpy to analyze multiplexed single-cell proteomics data.☆18Mar 18, 2024Updated 2 years ago
- Deposited codes for snMultiome in human cortex manuscript☆13Aug 12, 2024Updated last year
- scripts for analyzing data of macrophage development in human☆10Dec 8, 2019Updated 6 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Dec 7, 2023Updated 2 years ago
- Paired Insertion Counting for snATAC-seq data☆19Mar 15, 2026Updated last week
- Blastocyst-like structures generated from human pluripotent stem cells☆13Sep 25, 2022Updated 3 years ago
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆15Feb 6, 2026Updated last month
- ☆16Jul 9, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- https://molecular-neurogenetics.github.io/truster/☆11Jul 14, 2025Updated 8 months ago
- R package for computing Association Plots☆17Nov 4, 2024Updated last year
- ☆24Feb 24, 2025Updated last year
- ☆12Jun 11, 2023Updated 2 years ago
- ☆17Apr 9, 2021Updated 4 years ago
- inferring regulatory cellular dynamics☆67Jan 13, 2026Updated 2 months ago
- Repository for scRNAseq study of human kidneys☆15Jun 14, 2019Updated 6 years ago