theislab / scvelo_notebooks
☆34Updated 3 years ago
Alternatives and similar repositories for scvelo_notebooks:
Users that are interested in scvelo_notebooks are comparing it to the libraries listed below
- ACTIONet single-cell analysis framework☆39Updated 7 months ago
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 5 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆74Updated last year
- Factorize-Recover for Perturb-seq analysis (FR-Perturb)☆20Updated 5 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆68Updated 2 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- scWGCNA☆60Updated 2 years ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆35Updated last year
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆45Updated 4 months ago
- ☆46Updated 2 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆38Updated 7 months ago
- ☆55Updated 6 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆60Updated 10 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆76Updated last year
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆29Updated 4 years ago
- ☆40Updated 4 years ago
- Single cell omics biology annotations☆51Updated 2 weeks ago
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Updated 5 years ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆58Updated last year
- ☆26Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- ☆35Updated 2 months ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆41Updated last year
- This is the official repository for the Human Cell Atlas Heart project.☆29Updated 4 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆71Updated 3 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated last year
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Updated 3 years ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆34Updated 2 years ago