theislab / scvelo_notebooksLinks
☆36Updated 4 years ago
Alternatives and similar repositories for scvelo_notebooks
Users that are interested in scvelo_notebooks are comparing it to the libraries listed below
Sorting:
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated 2 years ago
- ACTIONet single-cell analysis framework☆44Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆66Updated 5 months ago
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 6 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- ☆37Updated 9 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆28Updated 2 years ago
- Single cell omics biology annotations☆51Updated 8 months ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆66Updated 3 months ago
- Low-dimensional Projection of Single Cell Velocity☆28Updated 3 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 6 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆91Updated 6 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 11 months ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- scWGCNA☆61Updated 3 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆43Updated last year
- Tools for sgRNA calling in direct capture Perturb-seq data☆39Updated 2 years ago
- ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.☆27Updated 4 years ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Updated 4 years ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆43Updated 2 months ago
- SPROD: Spatial expression profiling de-noising☆36Updated 2 years ago
- ☆61Updated 4 years ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated last week
- ☆63Updated 5 years ago
- Single-cell Case Control Analysis☆52Updated this week