Zhen-Miao / PICsnATACLinks
Paired Insertion Counting for snATAC-seq data
☆17Updated 7 months ago
Alternatives and similar repositories for PICsnATAC
Users that are interested in PICsnATAC are comparing it to the libraries listed below
Sorting:
- ☆39Updated 4 months ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆19Updated 2 years ago
- ☆32Updated 11 months ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- cell type specific, trait-associated gene regulation☆29Updated 8 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Updated last year
- Single-cell Case Control Analysis☆52Updated last week
- ☆52Updated last year
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated last week
- Harmony framework for connecting scRNA-seq data from discrete time points☆53Updated 3 weeks ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 8 months ago
- ☆39Updated 4 years ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated 3 months ago
- ADTnorm normalizes the cell surface protein measurement of CITE-seq data, facilitating across batches and across studies data integration…☆25Updated 5 months ago
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆15Updated last year
- Ordering gene-expression and functional events in single-cell experiments☆27Updated last year
- ☆44Updated last month
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆37Updated last year
- .h5mu files interface for Seurat☆32Updated 2 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆11Updated 2 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated 2 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago
- ☆29Updated 2 years ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 11 months ago
- Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data☆14Updated last year
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year