Zhen-Miao / PICsnATAC
Paired Insertion Counting for snATAC-seq data
☆17Updated 8 months ago
Alternatives and similar repositories for PICsnATAC:
Users that are interested in PICsnATAC are comparing it to the libraries listed below
- ☆30Updated 3 months ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆22Updated 5 months ago
- cell type specific, trait-associated gene regulation☆24Updated last month
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 6 months ago
- ☆49Updated 9 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆40Updated 3 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 5 months ago
- Mapping pipeline for snmC-seq based technologies.☆20Updated last year
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆64Updated 6 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆39Updated 2 years ago
- ☆29Updated 2 years ago
- ☆33Updated last year
- Code repository for the snRNA-seq cross-tissue atlas project☆20Updated 3 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- ☆16Updated 9 months ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- Removing empty droplets in multiome datasets☆16Updated 11 months ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆26Updated 2 years ago
- ☆36Updated 7 months ago
- Functional Inference of Gene Regulation☆43Updated 10 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 5 months ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- Multi-resolution Variational Inference☆22Updated last month
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated last month
- Functions for single cell data analysis☆31Updated 3 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆49Updated this week