Zhen-Miao / PICsnATACLinks
Paired Insertion Counting for snATAC-seq data
☆17Updated 5 months ago
Alternatives and similar repositories for PICsnATAC
Users that are interested in PICsnATAC are comparing it to the libraries listed below
Sorting:
- ☆32Updated 9 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- ☆51Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆22Updated last year
- ☆39Updated 2 months ago
- cell type specific, trait-associated gene regulation☆29Updated 6 months ago
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆37Updated last year
- Landscape Single Cell Entropy☆20Updated 5 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- Single-cell Case Control Analysis☆52Updated last week
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆34Updated 6 months ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆17Updated 3 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- ☆39Updated 4 years ago
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆20Updated 3 weeks ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆19Updated 2 years ago
- ☆31Updated 7 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 9 months ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆20Updated this week
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Updated 3 weeks ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- R package of CSOmap(developing☆13Updated 3 years ago
- scWGCNA☆61Updated 2 years ago
- R package to detect breakpoints and assign somies to scATAC-seq data☆41Updated 3 weeks ago
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆11Updated 2 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆26Updated 11 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated 2 months ago
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆69Updated last month
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 3 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated 2 years ago