Alternatives and similar repositories for scMTNI:

Users that are interested in scMTNI are comparing it to the libraries listed below

• xiaoyeye / TFvelo
  ☆44Updated 10 months ago
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆43Updated last year
• WPZgithub / CEFCON
  Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data
  ☆22Updated 5 months ago
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆32Updated last year
• theislab / regvelo
  inferring regulatory cellular dynamics
  ☆35Updated 2 months ago
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆39Updated 2 months ago
• beyondpie / CEMBA_wmb_snATAC
  Whole mouse brain snATAC seq analysis
  ☆25Updated this week
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆61Updated 11 months ago
• YosefLab / velovi
  ☆39Updated this week
• wanglabtongji / STRIDE
  STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …
  ☆26Updated last year
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆71Updated 3 months ago
• kaizhang / single-cell-benchmark
  ☆10Updated last year
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆38Updated 6 months ago
• lanagarmire / Asgard
  ☆41Updated last year
• KlugerLab / GeneTrajectory-python
  Python implementation of Gene Trajectory
  ☆25Updated 6 months ago
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆59Updated 2 years ago
• cliffren / PENCIL
  PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.
  ☆28Updated last year
• saezlab / greta
  Benchmark of GRNs using the GRETA pipeline
  ☆23Updated this week
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆66Updated last year
• zhouzilu / cTPnet
  cTPnet Package
  ☆25Updated 2 years ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆50Updated 2 weeks ago
• noobCoding / Benchmarking-integration-of-differential-expression
  ☆24Updated last year
• ImmucanWP7 / immucan-scdb
  ☆16Updated last year
• MagpiePKU / EpiTrace
  Cell age determination by scATAC-seq and bulk-ATAC-seq
  ☆29Updated 6 months ago
• Teichlab / Pan_fetal_immune
  Collection of scripts for analysis of pan fetal immune atlas
  ☆26Updated 2 years ago
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆56Updated 11 months ago
• cantinilab / Circe
  Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).
  ☆20Updated last month
• AllonKleinLab / cospar
  ☆26Updated last year
• raphael-group / CalicoST
  Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics
  ☆33Updated 2 weeks ago
• ma-compbio / GAGE-seq
  Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq
  ☆12Updated 11 months ago