Alternatives and similar repositories for scMTNI

Users that are interested in scMTNI are comparing it to the libraries listed below

• xiaoyeye / TFvelo
  ☆45Updated last year
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆70Updated last year
• YosefLab / velovi
  ☆40Updated this week
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆43Updated last year
• WPZgithub / CEFCON
  Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data
  ☆24Updated 8 months ago
• madilabcode / scNET
  ☆45Updated last week
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆41Updated 6 months ago
• snehamitra / SCARlink
  ☆54Updated 2 weeks ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆51Updated 2 months ago
• mcgilldinglab / scSemiProfiler
  A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…
  ☆24Updated last month
• theislab / regvelo
  inferring regulatory cellular dynamics
  ☆48Updated last week
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆63Updated this week
• mcgilldinglab / CellAgentChat
  Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data
  ☆31Updated 3 months ago
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆42Updated 9 months ago
• mcgilldinglab / UNAGI
  Unagi: Deep Generative Model for Deciphering Cellular Dynamics and In-Silico Drug Discovery in Complex Diseases.
  ☆23Updated 2 weeks ago
• WanluLiuLab / scAtlasVAE
  ☆36Updated 2 weeks ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆79Updated 6 months ago
• MagpiePKU / EpiTrace
  Cell age determination by scATAC-seq and bulk-ATAC-seq
  ☆32Updated 10 months ago
• AllonKleinLab / paper-data
  ☆20Updated 3 weeks ago
• bowang-lab / DeepVelo
  ☆47Updated last year
• yutongo / TIGON
  ☆46Updated 3 months ago
• cliffren / PENCIL
  PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.
  ☆28Updated last year
• datapplab / AutoClass
  ☆44Updated 3 years ago
• Durenlab / LINGER
  ☆108Updated last month
• wanglabtongji / STRIDE
  STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …
  ☆26Updated last year
• ImmucanWP7 / immucan-scdb
  ☆16Updated last year
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆59Updated last year
• lanagarmire / Asgard
  ☆43Updated last year
• zhouzilu / cTPnet
  cTPnet Package
  ☆25Updated 3 years ago
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆35Updated 2 years ago