wanglab-broad / mCNS-atlasLinks
☆19Updated last year
Alternatives and similar repositories for mCNS-atlas
Users that are interested in mCNS-atlas are comparing it to the libraries listed below
Sorting:
- CeLEry: cell location recovery in single-cell RNA sequencing☆37Updated 11 months ago
- Methods for visualization and analysis of spatially-resolved gene expression☆22Updated 5 months ago
- CAST package☆42Updated last year
- Analyzing cellular niches in spatial transcriptomics data☆34Updated last year
- ☆53Updated 2 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Updated 3 years ago
- iterative clustering pipeline of big single cell datasets.☆36Updated 4 months ago
- Information-based dimensionality reduction☆29Updated last year
- An R package for performing cell typing in SMI and other single cell data☆46Updated 8 months ago
- Spatial direct messaging detected by bivariate Moran☆32Updated 6 months ago
- ☆32Updated 11 months ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆70Updated 2 months ago
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 4 years ago
- ☆48Updated 3 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 8 months ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆48Updated 4 years ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆38Updated 3 years ago
- cell type specific, trait-associated gene regulation☆29Updated 10 months ago
- Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data☆14Updated last year
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆65Updated last week
- SPROD: Spatial expression profiling de-noising☆36Updated 2 years ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆54Updated last year
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆84Updated 3 years ago
- ☆59Updated 3 weeks ago
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆38Updated last month
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆30Updated 2 years ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆47Updated last year
- Framework for analysis of cell-types and Ligand-Receptor cooccurrences☆18Updated 2 years ago
- ☆19Updated 6 years ago
- Reproducibility repository for the Human Neural Organoid Atlas publication☆43Updated last year