lhqing / wmb2023
Code and data sharing of Liu et al. 2023 manuscript
☆15Updated last year
Related projects ⓘ
Alternatives and complementary repositories for wmb2023
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆19Updated 3 years ago
- ☆40Updated 3 months ago
- Snakemake pipeline for plate scATAC-seq processing☆27Updated 11 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆24Updated 2 weeks ago
- ☆27Updated 2 months ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆30Updated last year
- Analyzing chromatin accessibility data in R☆18Updated last year
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆24Updated 3 weeks ago
- ☆20Updated last year
- ☆31Updated 5 years ago
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆16Updated 4 months ago
- Network construction Algorithm☆18Updated 2 months ago
- ☆28Updated 8 months ago
- ☆30Updated 6 months ago
- ☆11Updated 11 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆17Updated 9 months ago
- Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel☆15Updated 2 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆21Updated 5 years ago
- Functional Inference of Gene Regulation☆36Updated 4 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆44Updated 3 weeks ago
- Paired Insertion Counting for snATAC-seq data☆16Updated 2 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 2 weeks ago
- Code repository for the snRNA-seq cross-tissue atlas project☆20Updated 2 years ago
- ☆10Updated last year
- ☆18Updated 7 months ago
- scover☆22Updated last year
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- Ordering gene-expression and functional events in single-cell experiments☆18Updated 8 months ago
- ☆29Updated last year
- SClineager: a Bayesian hierarchical model that performs lineage tracing of single cells based on genetic markers☆9Updated 6 months ago