cziegenhain / UMIcountR
☆16Updated 2 years ago
Alternatives and similar repositories for UMIcountR:
Users that are interested in UMIcountR are comparing it to the libraries listed below
- Single-cell RNA Processing Software☆11Updated 6 months ago
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆20Updated 5 months ago
- R package for Flexible dot plots☆29Updated 2 years ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated last week
- ☆11Updated last year
- An R package to analyze single-cell V(D)J data☆25Updated last year
- Scripts to install as a Bioconda package for making workflows☆18Updated 7 months ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- scover☆23Updated last year
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 8 months ago
- Trans-association between HLA and TCR-CDR3☆17Updated 2 years ago
- ☆28Updated 4 months ago
- Analysis pipeline for our circSC manuscript☆13Updated 2 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 3 years ago
- ☆20Updated last year
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- Bead-based single-cell atac processing☆33Updated 3 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆14Updated last year
- distinct: a method for differential analyses via hierarchical permutation tests☆11Updated last year
- tools in python and R for analyzing biological count data, especially from single cell RNAseq☆22Updated last year
- ☆12Updated 11 months ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated 11 months ago
- SCASA: Single cell transcript quantification tool☆21Updated last year
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆14Updated 2 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆31Updated 3 weeks ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆20Updated 2 years ago
- ☆29Updated 2 years ago