cziegenhain / UMIcountR
☆16Updated 2 years ago
Alternatives and similar repositories for UMIcountR:
Users that are interested in UMIcountR are comparing it to the libraries listed below
- Scripts to install as a Bioconda package for making workflows☆18Updated 4 months ago
- An R package to analyze single-cell V(D)J data☆24Updated last year
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆20Updated 2 months ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated last month
- Bead-based single-cell atac processing☆31Updated 3 years ago
- Single-cell RNA Processing Software☆11Updated 3 months ago
- ☆11Updated last year
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆20Updated last month
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆15Updated 3 years ago
- ☆20Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆34Updated 3 years ago
- R package for Flexible dot plots☆29Updated 2 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- ☆29Updated last year
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆26Updated 3 years ago
- Pipeline for Universal Mapping of ATAC-seq☆24Updated 8 months ago
- Isoform co-usage networks from single-cell RNA-seq data☆15Updated 10 months ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆30Updated last year
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 4 years ago
- ☆25Updated last month
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆20Updated 3 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- scover☆22Updated last year
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆15Updated 2 years ago
- Code for EpiMap data browser☆14Updated 7 months ago
- distinct: a method for differential analyses via hierarchical permutation tests☆11Updated last year
- ☆45Updated 5 months ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 7 months ago