PoisonAlien / somaticfreqLinks
knowledge-based genotyping of cancer hotspots from the tumor BAM files
☆21Updated 3 years ago
Alternatives and similar repositories for somaticfreq
Users that are interested in somaticfreq are comparing it to the libraries listed below
Sorting:
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆22Updated this week
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆16Updated last year
- Model-based tumour subclonal deconvolution using population genetics☆33Updated last month
- DriverPower☆26Updated 8 months ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 3 years ago
- Filter and prioritize fusion calls☆20Updated last year
- ☆12Updated 5 years ago
- Python function for TMB snake plots☆16Updated 5 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago
- ☆17Updated last year
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆12Updated 3 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- ☆12Updated last year
- cDriver R package for finding candidate driver genes in cancers☆18Updated 7 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year
- GWAS and rare variants tests at high speed using regenie☆15Updated 9 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- Workflow for Sequenza, cellularity and ploidy☆20Updated last month
- iread☆25Updated 4 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆38Updated last year
- An R package to interpret biological trends from DNA methylation data☆18Updated 3 years ago
- mutSignatures R package - updated (dev) version - 2.1.4☆14Updated 2 years ago
- MicrOSAtellite Instability Classifier☆15Updated 7 years ago
- Implementation of FACETS for Terra☆12Updated 2 years ago
- ☆17Updated 2 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆14Updated 8 years ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- Utility functions for FACETS☆39Updated last year