bcgsc / ntSynt-vizLinks
Multi-genome synteny block visualization tool
☆43Updated 7 months ago
Alternatives and similar repositories for ntSynt-viz
Users that are interested in ntSynt-viz are comparing it to the libraries listed below
Sorting:
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆37Updated 2 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆27Updated 3 weeks ago
- A genome assembly assessment pipeline.☆37Updated last year
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- ☆41Updated 2 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 6 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- Genome alignment and synteny plots☆31Updated 2 years ago
- Domain based annotation of transposable elements☆20Updated 3 months ago
- Robust identification of orthologous Synteny with the Orthology Index☆29Updated last week
- Chromosome-level synteny plotting using orthologous regions☆29Updated 11 months ago
- Genome Annotation Pipeline☆36Updated last year
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- Automatic evaluation of HGTs☆30Updated 6 months ago
- Dinoflagellate Annotation Workflow☆15Updated 2 years ago
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- ☆28Updated last year
- Yet another Hi-C scaffolding tool☆21Updated 10 months ago
- ☆32Updated last year
- HELIANO is a software for detection and classification of Helitron-like elements.☆29Updated 2 months ago
- ☆24Updated last year
- ☆32Updated 4 years ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆41Updated 4 months ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Updated 7 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- ☆30Updated 7 months ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆31Updated 7 months ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Updated 2 years ago