Multi-genome synteny block visualization tool
☆55Feb 25, 2026Updated last week
Alternatives and similar repositories for ntSynt-viz
Users that are interested in ntSynt-viz are comparing it to the libraries listed below
Sorting:
- Homologizer: phasing gene copies into polyploid subgenomes☆11Feb 3, 2026Updated last month
- CATG (Collinearity-based Assembly correcTor GUI) is a tool that can correct genome assembly with collinearity and generate tour files for…☆17Jan 24, 2026Updated last month
- ☆12Jun 12, 2023Updated 2 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆43Jan 7, 2026Updated last month
- Consensus genome annotation using OMA☆31Jan 14, 2026Updated last month
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Jul 26, 2023Updated 2 years ago
- Detecting multi-genome synteny using minimizer graph mapping☆103Feb 9, 2026Updated 3 weeks ago
- Correcting errors in noisy long reads using variation graphs☆50Nov 17, 2022Updated 3 years ago
- This is the standalone version of the EviAnn pipeline☆139Feb 5, 2026Updated last month
- ☆14Updated this week
- Improved long-read assembly by preserving contained reads☆30Aug 22, 2024Updated last year
- FastOMA is a scalable software package to infer orthology relationship.☆90Feb 27, 2026Updated last week
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Mar 5, 2023Updated 3 years ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆22Jan 21, 2026Updated last month
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆122Feb 24, 2026Updated last week
- Whole Genome Alignment Tools☆216Nov 6, 2025Updated 4 months ago
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆35Dec 24, 2025Updated 2 months ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆54Dec 11, 2025Updated 2 months ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆12Nov 6, 2025Updated 4 months ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆44Mar 7, 2024Updated 2 years ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆70Mar 23, 2025Updated 11 months ago
- JTK -- a regional diploid genome assembler☆25Oct 20, 2024Updated last year
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆65Jun 16, 2025Updated 8 months ago
- Transformer-based sequence correction method for genome assembly polishing☆99Mar 11, 2025Updated 11 months ago
- Reconstruction of ancestral genome maps☆16Mar 29, 2018Updated 7 years ago
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 3 months ago
- ☆15Jan 19, 2022Updated 4 years ago
- A genome assembly assessment pipeline.☆37Nov 20, 2023Updated 2 years ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆39Feb 1, 2023Updated 3 years ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆44Feb 15, 2026Updated 2 weeks ago
- An R package to infer and analyze synteny networks from protein sequences☆36Jul 23, 2025Updated 7 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆32Sep 11, 2025Updated 5 months ago
- ☆29Mar 4, 2022Updated 4 years ago
- oxford dot plots☆164Feb 17, 2026Updated 2 weeks ago
- Tiberius is a deep learning gene finder.☆99Feb 26, 2026Updated last week
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Mar 26, 2023Updated 2 years ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Sep 19, 2020Updated 5 years ago
- A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…☆33May 14, 2025Updated 9 months ago