LiaOb21 / colora
A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitochondrion and/or chloroplast). It automatically assesses the quality of the results.
☆17Updated 5 months ago
Alternatives and similar repositories for colora:
Users that are interested in colora are comparing it to the libraries listed below
- Genome Annotation Pipeline☆35Updated 6 months ago
- A shiny application to visualize MCscan result☆35Updated 2 years ago
- ☆27Updated last year
- Chromosome-level synteny plotting using orthologous regions☆29Updated 5 months ago
- Mabs, a genome assembly tool which optimizes parameters of Hifiasm and Flye☆29Updated 2 months ago
- ☆39Updated last year
- ☆31Updated 3 months ago
- ☆19Updated 2 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆30Updated 2 weeks ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- R package to draw syntenic plots in 3 different styles☆39Updated last year
- ☆17Updated last year
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆14Updated last month
- Python wrappers for programs that search for transposable elements☆19Updated 8 years ago
- STAG: Species Tree from All Genes☆33Updated 6 years ago
- ☆32Updated 4 years ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆20Updated 8 months ago
- Domain based annotation of transposable elements☆19Updated last month
- Automatic evaluation of HGTs☆26Updated last month
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated last year
- A tool for evaluating long-read de novo assembly results☆32Updated 6 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆19Updated 4 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆13Updated this week
- ContScout sequence contamination filter tool☆20Updated last month