A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitochondrion and/or chloroplast). It automatically assesses the quality of the results.
☆35Apr 7, 2026Updated 3 weeks ago
Alternatives and similar repositories for colora
Users that are interested in colora are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆23Jan 21, 2026Updated 3 months ago
- A organelle de novo genome assembly toolkit☆76Feb 22, 2025Updated last year
- scripts to parse and analyse MCScanX collinearity output☆32Mar 3, 2020Updated 6 years ago
- Foreign Contamination Screening - GX source code☆27Jun 9, 2025Updated 10 months ago
- OpenGL Powered Pretext Contact Map Viewer☆60Apr 23, 2026Updated last week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A genome completeness evaluation tool based on miniprot☆238Sep 18, 2025Updated 7 months ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆167Oct 29, 2025Updated 6 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆33Sep 11, 2025Updated 7 months ago
- Gene Family Annotation Workflow☆12Mar 26, 2024Updated 2 years ago
- ☆45Jul 23, 2025Updated 9 months ago
- chloroplast genome assembly using long reads data☆16Jul 8, 2025Updated 9 months ago
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆36Apr 20, 2026Updated last week
- Prefix-renaming FASTA records really fast.☆18Jun 26, 2024Updated last year
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated 7 months ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆206Apr 20, 2026Updated last week
- A pipeline creation tool using Snakemake☆13Apr 24, 2026Updated last week
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Jan 17, 2020Updated 6 years ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆124Feb 24, 2026Updated 2 months ago
- Multi-genome synteny block visualization tool☆57Apr 16, 2026Updated 2 weeks ago
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆21Nov 2, 2024Updated last year
- ☆15Aug 6, 2025Updated 8 months ago
- k-mer based assembly evaluation☆343Jun 28, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆266Jan 5, 2026Updated 3 months ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆108Jul 23, 2024Updated last year
- quickly filter fastq files by matching sequences to a set of regex patterns☆58Apr 18, 2026Updated last week
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 2 months ago
- EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…☆26Mar 11, 2023Updated 3 years ago
- Yet another Hi-C scaffolding tool☆22Oct 23, 2024Updated last year
- Terminal-based multiple sequence alignment (MSA) viewer designed for remote and HPC bioinformatics workflows.☆30Apr 23, 2026Updated last week
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆70Mar 23, 2025Updated last year
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆59Jan 7, 2026Updated 3 months ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆51Jan 16, 2024Updated 2 years ago
- ☆26Apr 22, 2025Updated last year
- Tool for fully-automated inference of species trees from raw genome assemblies☆48Mar 24, 2026Updated last month
- Renames headers in FASTA file☆13Jun 28, 2017Updated 8 years ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆179Oct 20, 2024Updated last year