Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
☆59Jan 7, 2026Updated 4 months ago
Alternatives and similar repositories for mm2-plus
Users that are interested in mm2-plus are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆58May 17, 2026Updated last week
- Detecting multi-genome synteny using minimizer graph mapping☆105Apr 27, 2026Updated 3 weeks ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Multi-genome synteny block visualization tool☆57Updated this week
- Consensus genome annotation using OMA☆31Jan 14, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆36Apr 20, 2026Updated last month
- Improved long-read assembly by preserving contained reads☆30Aug 22, 2024Updated last year
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆251Apr 13, 2026Updated last month
- Misassembly Identifier☆18May 8, 2026Updated 2 weeks ago
- Whole Genome Alignment Tools☆224Nov 6, 2025Updated 6 months ago
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 2 months ago
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆26Mar 11, 2026Updated 2 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Jul 26, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- pangenome from maximal blocks in an MSA☆11Sep 17, 2024Updated last year
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆219Updated this week
- This is the standalone version of the EviAnn pipeline☆147May 14, 2026Updated last week
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆65Jun 16, 2025Updated 11 months ago
- consensus approach for community profiling with nanopore amplicon sequencing data☆16Sep 30, 2024Updated last year
- A genomic k-mer counter (and sequence utility) with nice features.☆166Jul 4, 2025Updated 10 months ago
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 8 months ago
- reference-free transcriptome assembly for short and long reads☆109Mar 13, 2026Updated 2 months ago
- Constructing a pangenome gene graph☆206Aug 11, 2025Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆15Jan 28, 2026Updated 3 months ago
- PECAT, a phased error correct and assembly tool☆65Dec 8, 2025Updated 5 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆123May 4, 2026Updated 3 weeks ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆131Apr 17, 2026Updated last month
- Rapidly extract reads from a FASTQ file based on taxonomic classification via Kraken2.☆13Jan 26, 2026Updated 3 months ago
- Ultra-rapid detection of viral variants directly from sequencing data☆42Feb 17, 2026Updated 3 months ago
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆113Feb 28, 2026Updated 2 months ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆215May 9, 2026Updated 2 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Fast pairwise transmission inference from single genome and/or metagenomic data☆34Aug 1, 2025Updated 9 months ago
- Flexible workflow designed for bacterial WGS analyses (annotation, core/pan-genome reconstruction, phylogeny)☆12Aug 6, 2023Updated 2 years ago
- TD2☆39May 17, 2026Updated last week
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jan 31, 2025Updated last year
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Apr 29, 2021Updated 5 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆64Apr 17, 2026Updated last month
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆37Apr 28, 2026Updated 3 weeks ago