at-cg / mm2-plusLinks
Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
☆33Updated last month
Alternatives and similar repositories for mm2-plus
Users that are interested in mm2-plus are comparing it to the libraries listed below
Sorting:
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 3 months ago
- Minimizer-based assembly scaffolding and mapping using long reads☆43Updated 9 months ago
- ☆26Updated 11 months ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Differential k-mer analysis☆36Updated last year
- Genome size estimation from long read overlaps☆59Updated last week
- ☆42Updated last week
- Consensus genome annotation using OMA☆26Updated last month
- Improved Phased Assembler☆28Updated 3 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 10 months ago
- ☆27Updated 2 years ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆33Updated 2 weeks ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆38Updated 4 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 9 months ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆18Updated 2 months ago
- transposable element typing pipeline☆18Updated last year
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 2 weeks ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated last year
- A comparative genome scaffolding tool☆17Updated 6 years ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated 8 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated 2 weeks ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Fast and scalable nanopore adaptive sampling☆34Updated 2 years ago
- ☆21Updated 3 weeks ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 8 months ago
- Better Alignments with Translated HMMER☆21Updated 3 weeks ago
- Implementation of ToL genome assembly workflows☆20Updated last week