at-cg / mm2-plusLinks
Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
☆35Updated 3 months ago
Alternatives and similar repositories for mm2-plus
Users that are interested in mm2-plus are comparing it to the libraries listed below
Sorting:
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 5 months ago
- Infering ancestral synteny with hierarchical orthologous groups☆31Updated last week
- ☆28Updated last year
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆40Updated last week
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆19Updated 3 weeks ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- ☆20Updated 3 years ago
- Linear-time de novo Long Read Assembler☆41Updated 8 months ago
- ☆45Updated 2 months ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- ☆18Updated last year
- Consensus genome annotation using OMA☆26Updated 3 months ago
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 10 months ago
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆23Updated last month
- Differential k-mer analysis☆37Updated last year
- Genome size estimation from long read overlaps☆61Updated 2 weeks ago
- FastK based version of Merqury☆28Updated last week
- Better Alignments with Translated HMMER☆22Updated last week
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆28Updated last month
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆37Updated 3 weeks ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Updated 6 years ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆30Updated 10 months ago
- COsine-based SImilarity Genotyper using pangenomes☆21Updated 2 weeks ago
- ☆28Updated 2 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 10 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆40Updated 11 months ago
- Taxon-aware analysis of clustered protein sequences☆31Updated last year