TurakhiaLab / ROADIES
Tool for fully-automated inference of species trees from raw genome assemblies
☆19Updated last week
Related projects: ⓘ
- Genome alignment and synteny plots☆27Updated last year
- BUSCOMP: BUSCO Compiler and Comparison tool☆20Updated 6 months ago
- R package to draw syntenic plots in 3 different styles☆39Updated 9 months ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆23Updated 3 months ago
- Convergent substitution detection tool based on the PCOC model☆28Updated 2 years ago
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆10Updated 9 years ago
- Automatic evaluation of HGTs☆21Updated last week
- Domain based annotation of transposable elements☆18Updated 10 months ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆35Updated 2 years ago
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆16Updated 2 months ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆17Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆21Updated 2 years ago
- Draw a dot plot from a paf alignment☆22Updated 8 months ago
- The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support☆21Updated last week
- Toolkit for evolutionary analyses of linkage groups☆21Updated 2 months ago
- R package for comparison of synteny conservation at the genome-wide scale.☆13Updated 3 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- Chromosome-level synteny plotting using orthologous regions☆26Updated this week
- ☆25Updated 2 months ago
- scripts to parse and analyse MCScanX collinearity output☆29Updated 4 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆12Updated 5 years ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆12Updated 2 years ago
- Dinoflagellate Annotation Workflow☆11Updated last year
- Plant genome assembly and annotation pipeline using snakemake☆33Updated last year
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated last year
- The MafFilter genome alignment processor☆17Updated this week
- ☆9Updated 6 months ago
- Script to help assessing the evolutionary history of a TE family☆14Updated 5 years ago
- Add multiple thread function for genome comparison☆15Updated 2 years ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆10Updated last year