Tool for fully-automated inference of species trees from raw genome assemblies
☆49May 12, 2026Updated last week
Alternatives and similar repositories for ROADIES
Users that are interested in ROADIES are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆42May 6, 2026Updated 2 weeks ago
- Pangenome Mutation-Annotated Networks☆43Apr 9, 2026Updated last month
- ☆45Oct 29, 2022Updated 3 years ago
- que paquete☆10Jul 17, 2024Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A pipeline creation tool using Snakemake☆13Apr 24, 2026Updated 3 weeks ago
- A genome completeness evaluation tool based on miniprot☆242Sep 18, 2025Updated 8 months ago
- This is the standalone version of the EviAnn pipeline☆145Apr 24, 2026Updated 3 weeks ago
- Repository for the Data challenge about Software and Statistical Methods for Population Genetics (SSMPG 2017)☆14Sep 19, 2017Updated 8 years ago
- Associated code for EvoWeaver publication☆17May 19, 2025Updated last year
- ☆21Oct 2, 2024Updated last year
- ☆45Dec 11, 2025Updated 5 months ago
- ☆16Jun 30, 2022Updated 3 years ago
- A novel genome assembly pipeline based on deep learning☆70Dec 2, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A tool for visualization of pairwise alignments of multiple sequences☆19Aug 12, 2025Updated 9 months ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆149Apr 13, 2026Updated last month
- High-precision TE Annotator☆157Dec 4, 2025Updated 5 months ago
- Accelerated Bayesian inference of population size history from whole genome data.☆35Apr 6, 2026Updated last month
- Detecting multi-genome synteny using minimizer graph mapping☆105Apr 27, 2026Updated 3 weeks ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆268Jan 5, 2026Updated 4 months ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Nov 22, 2019Updated 6 years ago
- Multi-genome synteny block visualization tool☆57May 12, 2026Updated last week
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆24Sep 23, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 3 years ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆205Nov 23, 2025Updated 5 months ago
- Consensus genome annotation using OMA☆31Jan 14, 2026Updated 4 months ago
- ☆22Aug 8, 2024Updated last year
- paml documentation and tutorials☆72Jan 9, 2026Updated 4 months ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆21Feb 13, 2026Updated 3 months ago
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆36Apr 20, 2026Updated last month
- Earl Grey: A fully automated TE curation and annotation pipeline☆206May 13, 2026Updated last week
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆113Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- TQSLE v1.0 released☆10Aug 29, 2023Updated 2 years ago
- Course material for UBC Biol525D☆12Aug 15, 2019Updated 6 years ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆88Mar 12, 2026Updated 2 months ago
- ☆190Feb 10, 2026Updated 3 months ago
- Programs for performing various population genetic analyses☆12Apr 5, 2026Updated last month
- Official home of genome aligner based upon notion of Cactus graphs☆678Updated this week
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Feb 15, 2021Updated 5 years ago