Alternatives and similar repositories for doubletrouble

Users that are interested in doubletrouble are comparing it to the libraries listed below

• bcgsc / ntSynt-viz
  Multi-genome synteny block visualization tool
  ☆52Updated 2 months ago
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆31Updated 3 years ago
• i10labtitech / GINGER
  ☆29Updated this week
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆33Updated 2 years ago
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆44Updated 4 months ago
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated 2 years ago
• Farre-lab / syntenyPlotteR
  R package to draw syntenic plots in 3 different styles
  ☆42Updated 4 months ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆38Updated 3 years ago
• baozg / phased-assembly-check
  ☆32Updated 11 months ago
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆22Updated last year
• JiaoLab2021 / SynDiv
  A tool for quick and accurate calculation of syntenic diversity.
  ☆42Updated 3 months ago
• slimsuite / chromsyn
  Chromosome-level synteny plotting using orthologous regions
  ☆31Updated last year
• almeidasilvaf / syntenet
  An R package to infer and analyze synteny networks from protein sequences
  ☆36Updated 5 months ago
• rhysf / Diamond2GO
  Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…
  ☆24Updated 3 weeks ago
• Kirovez / pyTanFinder
  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
  ☆13Updated 6 years ago
• heche-psb / wgd
  wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication
  ☆37Updated 10 months ago
• mongiardino / genesortR
  Sorting and subsampling phylogenomic datasets
  ☆28Updated 8 months ago
• SamiLhll / macrosyntR
  R package for comparison of synteny conservation at the genome-wide scale.
  ☆14Updated last year
• A-J-F-Mackintosh / syngraph
  Toolkit for evolutionary analyses of linkage groups
  ☆33Updated last year
• NBISweden / TransposonPSI
  TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…
  ☆14Updated 5 years ago
• jkimlab / DESCHRAMBLER
  ☆24Updated last month
• schmeing / gapless
  Gapless provides combined scaffolding, gap-closing and assembly correction with long reads
  ☆38Updated 2 years ago
• ellenbell / FasTE
  A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…
  ☆27Updated 3 years ago
• clemgoub / rm2gff3
  Convert RepeatMasker ".out" file into a gff3 with colors!!!
  ☆24Updated 5 years ago
• symgenoevolab / SyntenyFinder
  SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…
  ☆33Updated 11 months ago
• kavonrtep / dante
  Domain based annotation of transposable elements
  ☆21Updated 2 months ago
• HuffordLab / GenomeQC
  ☆35Updated 5 years ago
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆42Updated last year
• vgteam / giraffe-sv-paper
  ☆44Updated last year
• eswlab / orphan-prediction
  methods for orphan gene prediction paper optimization
  ☆25Updated 4 years ago