almeidasilvaf / doubletroubleLinks
An R package to identify and classify duplicated genes from whole-genome protein sequence data
☆26Updated 3 months ago
Alternatives and similar repositories for doubletrouble
Users that are interested in doubletrouble are comparing it to the libraries listed below
Sorting:
- Multi-genome synteny block visualization tool☆42Updated 5 months ago
- Computational Analysis of Gene Expression Evolution☆43Updated last week
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- Yet another Hi-C scaffolding tool☆21Updated 8 months ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 4 years ago
- Genome alignment and synteny plots☆30Updated 2 years ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated 9 months ago
- R package to draw syntenic plots in 3 different styles☆41Updated last year
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 6 years ago
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- ☆30Updated 6 months ago
- Sorting and subsampling phylogenomic datasets☆25Updated 3 months ago
- A genome assembly assessment pipeline.☆37Updated last year
- An R package to infer and analyze synteny networks from protein sequences☆30Updated 6 months ago
- Genome Annotation Pipeline☆36Updated 10 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- ☆32Updated 4 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 5 years ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆36Updated 5 months ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated last year
- This is a method to find telomeres and centromeres in plants.☆41Updated 2 years ago
- Domain based annotation of transposable elements☆19Updated 2 months ago
- scripts for sequence and feature conversion, annotation, analysis ...☆27Updated 4 months ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- scripts for the project of seven thaliana genomes assembly☆40Updated 4 years ago
- read and analyse RepeatMasker output☆24Updated 2 years ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆37Updated this week
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago