Run_dbcan V5
☆67Jul 28, 2026Updated 3 weeks ago
Alternatives and similar repositories for run_dbcan
Users that are interested in run_dbcan are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆168Apr 23, 2025Updated last year
- A command-line tool for profiling CAZyme abundances in metagenomic datasets.☆41Updated this week
- 🤝 Tool for mining KEGG pathways completeness data from eggNOG-mapper annotations☆42Updated this week
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆18Dec 29, 2022Updated 3 years ago
- This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)☆40Jul 27, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This is a repository for CAMPER.☆18Mar 18, 2024Updated 2 years ago
- ☆80Updated this week
- Similarity networks of biosynthetic gene clusters☆180Apr 1, 2026Updated 4 months ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆55May 16, 2026Updated 3 months ago
- Metagenomics-related extended functionalities to samtools☆22Updated this week
- FUGAsseM: Function predictor of Uncharacterized Gene products by Assessing high-dimensional community data in Microbiomes☆21Dec 26, 2025Updated 7 months ago
- code repo for mobileOG-db☆49Jul 30, 2026Updated 2 weeks ago
- CLI tool to annotate genes with KOfam☆106Jun 6, 2023Updated 3 years ago
- Multi-scale and multi-task benchmark for evaluating ML models for bacterial genomics across the bacterial tree of life.☆20Jul 27, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Classify metagenomic contigs as eukaryotic or prokaryotic☆46Feb 17, 2023Updated 3 years ago
- 基因组组装注释流程及脚本☆15Feb 12, 2023Updated 3 years ago
- Simultaneous Classification and Motif Identification(eCAMI)☆11Nov 21, 2021Updated 4 years ago
- A software for gap filling in genome assemblies☆10Aug 12, 2022Updated 4 years ago
- Systematic search of all known anti-phage systems.☆183May 5, 2026Updated 3 months ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆91Mar 12, 2026Updated 5 months ago
- An ultra-fast and accurate tool for KEGG Orthology (KO) assignment, powered by deep learning.☆21Jul 30, 2026Updated 2 weeks ago
- ☆17Updated this week
- PLANiTS: a curated sequence reference dataset for plant ITS DNA metabarcoding☆11Mar 31, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- geNomad: Identification of mobile genetic elements☆328Mar 29, 2026Updated 4 months ago
- ☆20Feb 24, 2026Updated 5 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆30Jul 21, 2026Updated 3 weeks ago
- Integrated Network Analysis Pipeline☆19Dec 19, 2024Updated last year
- Variational autoencoder for metagenomic binning☆331Apr 27, 2026Updated 3 months ago
- ☆21Jul 22, 2024Updated 2 years ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆16Apr 22, 2024Updated 2 years ago
- Functions for distance matrix objects in R.☆15Mar 9, 2026Updated 5 months ago
- ☆13Jun 6, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- a simple tool for listing conda environments with descriptions☆16Mar 28, 2025Updated last year
- Phage Annotation using Protein Structures☆171Updated this week
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆20Dec 5, 2023Updated 2 years ago
- Antimicrobial Peptide Structural Evolution Miner (AMP-SEMiner), an integrated AI framework designed for the simultaneous identification o…☆15May 10, 2025Updated last year
- GO KEGG annotation☆39Oct 19, 2022Updated 3 years ago
- SemiBin: metagenomics binning with self-supervised deep learning☆174Aug 3, 2026Updated 2 weeks ago
- A tool for scanning FASTA protein sequences against a library of Pfam HMMs☆28Aug 23, 2022Updated 3 years ago