Alternatives and similar repositories for mpwt

Users that are interested in mpwt are comparing it to the libraries listed below

• MrTomRod / orthofinder-tools
  Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …
  ☆19Updated last year
• almeidasilvaf / syntenet
  An R package to infer and analyze synteny networks from protein sequences
  ☆36Updated 5 months ago
• zhutao1009 / dnds
  Calculate the dn/ds (also pn and ps) value of cds
  ☆13Updated 5 years ago
• rhysf / Diamond2GO
  Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…
  ☆24Updated 3 weeks ago
• songweizhi / BioSAK
  A Swiss-Army-Knife for Bioinformaticians
  ☆13Updated 2 weeks ago
• gengit / PosiGene
  ☆26Updated 4 years ago
• raymondkiu / bioinformatics-tools
  Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files, rename fasta files (prefix a…
  ☆22Updated 2 months ago
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆37Updated 3 months ago
• Rowena-h / BUSCOfilter
  A tool to filter BUSCO output into single-copy gene files for phylogenomics
  ☆13Updated last year
• JLSteenwyk / orthofisher
  a broadly applicable tool for automated gene identification and retrieval
  ☆32Updated last year
• PlantDr430 / BuscoOrthoPhylo
  Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs
  ☆20Updated 6 years ago
• alexcritschristoph / soil_popgen
  Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes
  ☆16Updated 5 years ago
• althonos / pyfastani
  Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
  ☆23Updated 2 months ago
• peng-ye / MetaPGN
  A pipeline for construction and graphical visualization of annotated pangenome networks.
  ☆17Updated 7 years ago
• id-bioinfo / TIPars
  Taxa Insertion by Parsimony
  ☆15Updated 11 months ago
• timghaly / EcoFoldDB
  Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.
  ☆24Updated last month
• kwongj / roary2fripan
  Formats Roary output for viewing in FriPan
  ☆11Updated 7 years ago
• davidemms / STRIDE
  STRIDE: Species Tree Root Inference from Gene Duplication Events
  ☆11Updated 7 years ago
• stajichlab / Phyling
  Phyling: phylogenetic inference from annotated genomes
  ☆29Updated 2 weeks ago
• ThomasDOtto / ILRA
  Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs…
  ☆13Updated last year
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆29Updated 2 years ago
• DNKonanov / Snapper
  snapper
  ☆13Updated last year
• ERGA-consortium / pipelines
  ☆17Updated 6 months ago
• slimsuite / buscomp
  BUSCOMP: BUSCO Compiler and Comparison tool
  ☆21Updated last year
• xgrau / possvm-orthology
  Possvm: find clusters of orthologs in phylogenies using species overlap & MCL
  ☆16Updated last year
• zjshi / Maast
  Microbial agile accurate SNP Typer
  ☆30Updated 2 years ago
• DessimozLab / OMAnnotator
  Consensus genome annotation using OMA
  ☆31Updated 6 months ago
• rcedgar / palm_annot
  Scripts, HMMs and search databases for identifying and classifying viral RdRp sequences
  ☆11Updated 5 months ago
• Xiangyang1984 / Gcluster
  A simple-to-use tool for visualizing and comparing genome contexts for numerous genomes
  ☆18Updated 3 weeks ago
• danny-wilson / genomegaMap
  Within-species genome-wide dN/dS estimation from very many genomes
  ☆22Updated 5 years ago