Alternatives and similar repositories for mpwt

Users that are interested in mpwt are comparing it to the libraries listed below

• MrTomRod / orthofinder-tools
  Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …
  ☆19Updated last year
• songweizhi / BioSAK
  A Swiss-Army-Knife for Bioinformaticians
  ☆13Updated 2 months ago
• almeidasilvaf / syntenet
  An R package to infer and analyze synteny networks from protein sequences
  ☆34Updated 3 months ago
• rhysf / Diamond2GO
  Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…
  ☆23Updated 2 weeks ago
• PlantDr430 / BuscoOrthoPhylo
  Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs
  ☆20Updated 6 years ago
• gengit / PosiGene
  ☆26Updated 4 years ago
• kwongj / roary2fripan
  Formats Roary output for viewing in FriPan
  ☆11Updated 7 years ago
• zhutao1009 / dnds
  Calculate the dn/ds (also pn and ps) value of cds
  ☆13Updated 5 years ago
• slimsuite / buscomp
  BUSCOMP: BUSCO Compiler and Comparison tool
  ☆21Updated last year
• JLSteenwyk / orthosnap
  a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
  ☆26Updated 2 months ago
• DessimozLab / edgehog
  Infering ancestral synteny with hierarchical orthologous groups
  ☆35Updated last month
• Sanrrone / GGisy
  Genome-Genome circle synteny
  ☆25Updated last year
• csh3 / RegCloser
  RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…
  ☆15Updated last year
• stajichlab / Phyling
  Phyling: phylogenetic inference from annotated genomes
  ☆27Updated 3 weeks ago
• legumeinfo / pandagma
  Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.
  ☆17Updated 3 months ago
• mtisza1 / DNA_methylase_finder
  Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes
  ☆11Updated last year
• alexcritschristoph / soil_popgen
  Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes
  ☆16Updated 5 years ago
• zjshi / Maast
  Microbial agile accurate SNP Typer
  ☆29Updated last year
• DRL / kinfin
  Taxon-aware analysis of clustered protein sequences
  ☆31Updated last year
• jameslz / ncbi-kit
  Download NCBI assembly genomes with ftp. rsync, ascp
  ☆12Updated 3 years ago
• peng-ye / MetaPGN
  A pipeline for construction and graphical visualization of annotated pangenome networks.
  ☆17Updated 7 years ago
• davidemms / STRIDE
  STRIDE: Species Tree Root Inference from Gene Duplication Events
  ☆11Updated 7 years ago
• LKremer / MSA_trimmer
  Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.
  ☆17Updated 6 years ago
• danny-wilson / genomegaMap
  Within-species genome-wide dN/dS estimation from very many genomes
  ☆21Updated 5 years ago
• moshi4 / FastDTLmapper
  Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method
  ☆17Updated 2 years ago
• balabanmetin / uDance
  ☆42Updated last year
• timghaly / EcoFoldDB
  Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.
  ☆24Updated 2 weeks ago
• YaoZhou89 / WGSc
  ☆15Updated 3 years ago
• althonos / pyfastani
  Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
  ☆23Updated last month
• Rinoahu / SwiftOrtho
  A high performance tool to identify orthologs and paralogs across genomes.
  ☆27Updated 2 years ago