Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.
☆162Apr 23, 2025Updated last year
Alternatives and similar repositories for run_dbcan
Users that are interested in run_dbcan are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Rapid comparison and dereplication of genomes☆336Nov 10, 2025Updated 5 months ago
- SemiBin: metagenomics binning with self-supervised deep learning☆161Apr 25, 2026Updated last week
- Assessing the quality of metagenome-derived genome bins using machine learning☆257Mar 20, 2025Updated last year
- Virus Identification By iteRative ANnoTation☆194Apr 15, 2024Updated 2 years ago
- Toolbox for comparative genomics of MAGs☆90Apr 28, 2026Updated last week
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Variational autoencoder for metagenomic binning☆326Apr 27, 2026Updated last week
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆468Jul 28, 2023Updated 2 years ago
- DAS Tool☆173May 2, 2024Updated 2 years ago
- Pipeline for metabolic annotation of microbial genomes☆150Mar 20, 2025Updated last year
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆332Updated this week
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆636Feb 18, 2026Updated 2 months ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆597Apr 21, 2026Updated 2 weeks ago
- CLI tool to annotate genes with KOfam☆94Jun 6, 2023Updated 2 years ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆289Nov 28, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆225Mar 24, 2026Updated last month
- A hybrid assembly and MAG recovery pipeline (and more!)☆106Apr 29, 2026Updated last week
- Read alignment statistics for metagenomics☆396Apr 8, 2026Updated 3 weeks ago
- Gene cluster comparison figure generator☆640Dec 22, 2025Updated 4 months ago
- Fast genome-wide functional annotation through orthology assignment☆731Updated this week
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated last year
- A complete pipeline for metagenomic analysis☆442Updated this week
- Run_dbcan V5☆56Apr 29, 2026Updated last week
- An updated pipeline for pangenome investigation☆356Apr 22, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆72Dec 1, 2025Updated 5 months ago
- Binning Virus Genomes from Metagenomes☆74Jul 13, 2022Updated 3 years ago
- A user-friendly workflow for phylogenomics☆228Feb 5, 2026Updated 3 months ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆166Feb 13, 2026Updated 2 months ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆243Jan 20, 2026Updated 3 months ago
- This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)☆37Apr 7, 2026Updated 3 weeks ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆249Oct 12, 2025Updated 6 months ago
- Open prediction of Polysaccharide Utilisation Loci (PUL)☆26Apr 22, 2020Updated 6 years ago
- Microbial RNA annotation☆292Apr 12, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆18Feb 17, 2026Updated 2 months ago
- geNomad: Identification of mobile genetic elements☆304Mar 29, 2026Updated last month
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated last year
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆214Apr 24, 2026Updated last week
- Scripts for calculating features and regression of prokaryote OGT☆25Feb 13, 2024Updated 2 years ago
- Bioinformatics program inStrain☆184Mar 12, 2026Updated last month
- ☆16Dec 16, 2024Updated last year