Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.
☆169Apr 23, 2025Updated last year
Alternatives and similar repositories for run_dbcan
Users that are interested in run_dbcan are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Run_dbcan V5☆68Jul 28, 2026Updated last month
- Rapid comparison and dereplication of genomes☆357Sep 4, 2026Updated 2 weeks ago
- SemiBin: metagenomics binning with self-supervised deep learning☆175Updated this week
- Assessing the quality of metagenome-derived genome bins using machine learning☆280Mar 20, 2025Updated last year
- Virus Identification By iteRative ANnoTation☆204Apr 15, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Variational autoencoder for metagenomic binning☆332Apr 27, 2026Updated 4 months ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆477Updated this week
- Toolbox for comparative genomics of MAGs☆93Jul 30, 2026Updated last month
- DAS Tool☆177May 2, 2024Updated 2 years ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆342Updated this week
- Pipeline for metabolic annotation of microbial genomes☆155Mar 20, 2025Updated last year
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆681Aug 7, 2026Updated last month
- Simultaneous Classification and Motif Identification(eCAMI)☆11Nov 21, 2021Updated 4 years ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆622Updated this week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- customizable pipeline to identify viral sequences from (meta)genomic data☆301Nov 28, 2024Updated last year
- CLI tool to annotate genes with KOfam☆106Jun 6, 2023Updated 3 years ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆234Mar 24, 2026Updated 5 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆119Sep 9, 2026Updated 2 weeks ago
- Read alignment statistics for metagenomics☆407Updated this week
- Gene cluster comparison figure generator☆655Dec 22, 2025Updated 9 months ago
- Fast genome-wide functional annotation through orthology assignment☆784Aug 13, 2026Updated last month
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated 2 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆77Aug 13, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A complete pipeline for metagenomic analysis☆454Aug 28, 2026Updated 3 weeks ago
- A command-line tool for profiling CAZyme abundances in metagenomic datasets.☆43Updated this week
- Binning Virus Genomes from Metagenomes☆76Jul 13, 2022Updated 4 years ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆171Jun 10, 2026Updated 3 months ago
- A user-friendly workflow for phylogenomics☆234Sep 15, 2026Updated last week
- An updated pipeline for pangenome investigation☆377Jul 2, 2026Updated 2 months ago
- Functions to manipulate and visualize microbial community data☆12Sep 15, 2023Updated 3 years ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆252Sep 2, 2026Updated 3 weeks ago
- Open prediction of Polysaccharide Utilisation Loci (PUL)☆27Apr 22, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Microbial RNA annotation☆315Apr 12, 2026Updated 5 months ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆19Jun 10, 2026Updated 3 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆264May 13, 2026Updated 4 months ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated 2 years ago
- Bioinformatics program inStrain☆193Mar 12, 2026Updated 6 months ago
- Woltka: a versatile meta'omic data classifier☆81Sep 8, 2025Updated last year
- Scripts for calculating features and regression of prokaryote OGT☆26Feb 13, 2024Updated 2 years ago