linnabrown / run_dbcan
Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.
☆149Updated 2 months ago
Alternatives and similar repositories for run_dbcan:
Users that are interested in run_dbcan are comparing it to the libraries listed below
- Pipeline for metabolic annotation of microbial genomes☆144Updated 3 weeks ago
- geNomad: Identification of mobile genetic elements☆226Updated 3 weeks ago
- fast phage annotation program☆161Updated 2 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆204Updated 3 weeks ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆139Updated last week
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆117Updated last year
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆141Updated 6 months ago
- An updated pipeline for pangenome investigation☆295Updated last month
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆221Updated last month
- Download files from NCBI Entrez by accession☆122Updated 7 months ago
- FunGAP: fungal Genome Annotation Pipeline☆111Updated last year
- A user-friendly workflow for phylogenomics☆210Updated last week
- MGnify genome analysis pipeline☆105Updated 3 weeks ago
- Pan-genome wide association studies☆193Updated 10 months ago
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆111Updated 2 months ago
- Bioinformatics program inStrain☆163Updated last month
- ☆131Updated 9 months ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆153Updated 11 months ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆92Updated last week
- customizable pipeline to identify viral sequences from (meta)genomic data☆244Updated 4 months ago
- CAMISIM: Simulating metagenomes and microbial communities☆200Updated 8 months ago
- Bacterial ribosomal RNA predictor☆239Updated last year
- Find clustered hits from a BLAST search☆111Updated 4 months ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆206Updated 4 months ago
- Rapid comparison and dereplication of genomes☆282Updated this week
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆129Updated last week
- Processing pipeline for pan-genome visulization and exploration☆138Updated last year
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆177Updated this week
- breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is inte…☆161Updated last week
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆274Updated last week