linnabrown / run_dbcan
Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.
☆149Updated 3 weeks ago
Alternatives and similar repositories for run_dbcan:
Users that are interested in run_dbcan are comparing it to the libraries listed below
- Pipeline for metabolic annotation of microbial genomes☆142Updated 7 months ago
- geNomad: Identification of mobile genetic elements☆211Updated 3 weeks ago
- fast phage annotation program☆153Updated 3 weeks ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆195Updated last week
- Download files from NCBI Entrez by accession☆119Updated 5 months ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆134Updated 4 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆208Updated last month
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆133Updated last month
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆106Updated 3 weeks ago
- MGnify genome analysis pipeline☆104Updated last week
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆202Updated 2 months ago
- A user-friendly workflow for phylogenomics☆204Updated last week
- Processing pipeline for pan-genome visulization and exploration☆137Updated last year
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆115Updated last year
- Bacterial ribosomal RNA predictor☆234Updated last year
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆184Updated 6 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆262Updated this week
- customizable pipeline to identify viral sequences from (meta)genomic data☆237Updated 2 months ago
- FunGAP: fungal Genome Annotation Pipeline☆109Updated last year
- Find clustered hits from a BLAST search☆111Updated 2 months ago
- An updated pipeline for pangenome investigation☆280Updated last week
- Rapid comparison and dereplication of genomes☆275Updated last month
- ☆128Updated 7 months ago
- BSR-Based Allele Calling Algorithm☆140Updated this week
- Pan-genome wide association studies☆180Updated 8 months ago
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆194Updated this week
- Scan contig files against PubMLST typing schemes☆211Updated 2 years ago
- Metatranscriptomics Tutorial☆60Updated last year
- Metagenomic classification of long-read sequencing data☆74Updated this week
- Tool to plot synteny and structural rearrangements between genomes☆295Updated 2 months ago