Alternatives and similar repositories for Timesweeper

Users that are interested in Timesweeper are comparing it to the libraries listed below

• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆27Updated 7 months ago
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆29Updated 2 years ago
• grenaud / leeHom
  Bayesian reconstruction of ancient DNA fragments
  ☆28Updated 11 months ago
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆34Updated 3 years ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆39Updated last year
• mrvollger / SDA
  Segmental Duplication Assembler (SDA).
  ☆44Updated 2 years ago
• pkalbers / geva
  Genealogical Estimation of Variant Age (GEVA)
  ☆29Updated 3 years ago
• vgteam / sv-genotyping-paper
  ☆30Updated 5 years ago
• avaughn271 / CLUES2
  The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.
  ☆14Updated 3 months ago
• vgteam / giraffe-sv-paper
  ☆42Updated last year
• LauritsSkov / Introgression-detection
  ☆43Updated last month
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆31Updated 3 weeks ago
• Popgen48 / scalepopgen
  ☆24Updated last year
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆48Updated last year
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆43Updated 2 weeks ago
• ablab / stringdecomposer
  Tool for decomposition centromeric assemblies and long reads into monomers
  ☆36Updated 2 years ago
• maickrau / ribotin
  ☆36Updated this week
• clemgoub / rm2gff3
  Convert RepeatMasker ".out" file into a gff3 with colors!!!
  ☆21Updated 4 years ago
• human-pangenomics / hprc-tutorials
  ☆17Updated last year
• DessimozLab / OMAnnotator
  Consensus genome annotation using OMA
  ☆26Updated last month
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆30Updated 4 years ago
• Rosemeis / pcangsd
  Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
  ☆52Updated 3 weeks ago
• vpc-ccg / sedef
  Identification of segmental duplications in the genome
  ☆27Updated 3 years ago
• xin-huang / dadi-cli
  Automated and distributed population genetic model inference from allele frequency spectra
  ☆17Updated 3 months ago
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆25Updated 4 years ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆36Updated last week
• SandraLouise / SVJedi-graph
  SV genotyper for long reads with a variation graph
  ☆12Updated 4 months ago
• mrvollger / NucFreq
  ☆37Updated last year
• GLBRC / sppIDer
  a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data
  ☆19Updated 5 years ago