SchriderLab / TimesweeperLinks
Python package for detecting positive selective sweeps using time-series genomics sampling data.
☆19Updated last year
Alternatives and similar repositories for Timesweeper
Users that are interested in Timesweeper are comparing it to the libraries listed below
Sorting:
- Consensus genome annotation using OMA☆31Updated 3 weeks ago
- Haplotype and population structure inference using neural networks.☆28Updated last year
- Kmer Analysis of Pileups for Genotyping☆35Updated last week
- ☆31Updated 6 years ago
- Genealogical Estimation of Variant Age (GEVA)☆32Updated 4 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14Updated 2 years ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆18Updated 9 months ago
- ☆38Updated last month
- ☆19Updated last year
- Computational Analysis of Gene Expression Evolution☆45Updated 5 months ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Updated this week
- TD2☆31Updated 3 weeks ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- machine learning applications for dadi☆16Updated last year
- FastK based version of Merqury☆30Updated 2 weeks ago
- Genome-wide scan for balancing selection using beta statistic☆32Updated 2 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆37Updated 3 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆44Updated last year
- The MafFilter genome alignment processor☆19Updated last month
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Updated 2 years ago
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- ☆29Updated 2 years ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆53Updated last month
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆31Updated 7 months ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 5 years ago
- COsine SImilarity-based Genotyper using pangenomes☆25Updated 2 weeks ago