Alternatives and similar repositories for Timesweeper:

Users that are interested in Timesweeper are comparing it to the libraries listed below

• Popgen48 / scalepopgen
  ☆22Updated 10 months ago
• pkalbers / geva
  Genealogical Estimation of Variant Age (GEVA)
  ☆27Updated 3 years ago
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆27Updated 2 months ago
• GLBRC / sppIDer
  a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data
  ☆17Updated 5 years ago
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆28Updated last year
• jessicawleigh / popart
  General purpose population genetics software
  ☆12Updated 5 years ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆37Updated last year
• lntran26 / donni
  machine learning applications for dadi
  ☆14Updated 3 weeks ago
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆32Updated 2 years ago
• phyloacc / PhyloAcc
  PhyloAcc a software to detect the changes of conservation of a genomic region
  ☆29Updated 4 months ago
• vgteam / sv-genotyping-paper
  ☆30Updated 5 years ago
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆36Updated 3 weeks ago
• DrosophilaGenomeEvolution / TrEMOLO
  Transposable Elements MOvement detection using LOng reads
  ☆21Updated 2 months ago
• xukaili / CandiHap
  A haplotype analysis toolkit for natural variation study.
  ☆29Updated last year
• dfguan / asset
  assembly evaluation tool
  ☆34Updated 2 years ago
• CshlSiepelLab / argweaver
  Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)
  ☆13Updated last year
• ballesterus / Utensils
  Simple scripts for concatenate alignments and rename terminals for phylogenetics
  ☆21Updated 2 years ago
• MorrellLAB / BAD_Mutations
  Deleterious mutation prediction pipeline
  ☆13Updated 2 months ago
• drostlab / myTAI
  Evolutionary Transcriptomics with R
  ☆42Updated this week
• tsackton / linked-selection
  ☆24Updated 7 years ago
• slimsuite / chromsyn
  Chromosome-level synteny plotting using orthologous regions
  ☆29Updated 5 months ago
• caaswxb / SRY
  SRY: an effective method for sorting long-read of sex-limited (Y or W) chromosome.
  ☆18Updated last year
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆19Updated 3 months ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆35Updated last month
• bergmanlab / TELR
  TELR is a fast non-reference transposable element detector from long read sequencing data.
  ☆33Updated last year
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 2 years ago
• paula-tataru / polyDFE
  predicting DFE and alpha from polymorphism data
  ☆28Updated 6 years ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆31Updated last year
• A-J-F-Mackintosh / syngraph
  Toolkit for evolutionary analyses of linkage groups
  ☆26Updated 7 months ago