SchriderLab / TimesweeperLinks
Python package for detecting positive selective sweeps using time-series genomics sampling data.
☆19Updated last year
Alternatives and similar repositories for Timesweeper
Users that are interested in Timesweeper are comparing it to the libraries listed below
Sorting:
- Genome-wide scan for balancing selection using beta statistic☆32Updated 2 years ago
- Genealogical Estimation of Variant Age (GEVA)☆32Updated 4 years ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆18Updated 9 months ago
- Haplotype and population structure inference using neural networks.☆28Updated last year
- ArchaicSeeker is a series of software for detecting archaic introgression sequences and reconstructing introgression history. The latest …☆18Updated 5 months ago
- Computational Analysis of Gene Expression Evolution☆45Updated 5 months ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- ☆44Updated last year
- ☆31Updated 6 years ago
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Updated last month
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆24Updated 5 years ago
- Analyze and simulate Pool-Seq time series data☆17Updated 3 years ago
- machine learning applications for dadi☆16Updated last year
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- Tools and Utilities for msmc and msmc2☆50Updated last week
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆18Updated last week
- R package to draw syntenic plots in 3 different styles☆44Updated 5 months ago
- WinPCA. A package for windowed principal component analysis.☆44Updated last week
- R-package: Calculation of haplotype blocks and libraries☆35Updated 6 months ago
- Consensus genome annotation using OMA☆31Updated 2 weeks ago
- ☆38Updated last month
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Updated 3 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- The MafFilter genome alignment processor☆19Updated 3 weeks ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Updated 2 years ago
- Convergent substitution detection tool based on the PCOC model☆31Updated 4 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 5 years ago