Alternatives and similar repositories for pathview

Users that are interested in pathview are comparing it to the libraries listed below

• andreasmock / MetaboDiff
  ☆31Updated 4 years ago
• s-andrews / sradownloader
  A script to make downloading of SRA/GEO data easier
  ☆31Updated last year
• abodein / timeOmics
  Time-Course Multi-Omics data integration
  ☆25Updated last year
• luciorq / isoformic
  Isoform-level functional RNA-Seq analysis 🧬
  ☆25Updated 3 months ago
• 123xiaochen / VCFshiny
  ☆29Updated 11 months ago
• wyguo / ThreeDRNAseq
  A pipeline for differential expression and differential alternative splicing analysis
  ☆66Updated last year
• datapplab / SBGNview
  ☆28Updated 2 years ago
• djhn75 / RNAEditor
  ☆15Updated 3 years ago
• cccnrc / plot-VCF
  visual analysis of your VCF files
  ☆36Updated 2 years ago
• sk-sahu / sig-bio-shiny
  A standalone interactive application for detecting biological significance on a set of genes
  ☆40Updated 4 years ago
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆39Updated 3 years ago
• snystrom / memes
  An R interface to the MEME Suite
  ☆52Updated 3 months ago
• comprna / ORQAS
  ORF Quantification pipeline for Alternative Splicing
  ☆16Updated 4 years ago
• Oshlack / MINTIE
  Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
  ☆36Updated last year
• atc3 / maxquant_linux_guide
  A guide to running MaxQuant in Linux
  ☆34Updated 5 years ago
• Searchlight2 / Searchlight2
  Rapid analysis and visualisation for bulk RNA-seq, psuedo-bulk RNA-seq, GeoMx and Proteomic datasets.
  ☆30Updated last year
• apcamargo / tspex
  tspex: tissue-specificity calculator
  ☆32Updated 2 years ago
• NBISweden / workshop-mlbiostatistics
  Geared towards life scientists wanting to be able to understand and use basic statistical and machine learning methods
  ☆16Updated 3 months ago
• yyoshiaki / VIRTUS
  A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
  ☆34Updated 3 years ago
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆34Updated 2 months ago
• ulelab / ultraplex
  Ultra-fast 5' and 3' demultiplexer
  ☆28Updated last year
• drpowell / degust
  An interactive web-tool for RNA-seq analysis
  ☆68Updated 6 months ago
• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆37Updated last week
• gtonkinhill / TCGA_analysis
  ☆27Updated 2 years ago
• jianhong / trackViewer.documentation
  documentation for trackViewer
  ☆29Updated 6 years ago
• blekhmanlab / host_gene_microbiome_interactions
  Analysis framework for integrating gut microbiome and host gene expression data
  ☆33Updated 3 years ago
• jfjlaros / demultiplex
  Versatile FASTA/FASTQ demultiplexer.
  ☆33Updated last year
• costasilvati / consexpression
  Tool for RNA-Seq analysis.
  ☆39Updated 3 years ago
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆36Updated 5 months ago
• stephenturner / mergelanes
  Merge fastq files split over lanes
  ☆20Updated 7 years ago