Alternatives and similar repositories for pathview

Users that are interested in pathview are comparing it to the libraries listed below

• andreasmock / MetaboDiff
  ☆33Updated 5 years ago
• apcamargo / tspex
  tspex: tissue-specificity calculator
  ☆36Updated 2 years ago
• s-andrews / sradownloader
  A script to make downloading of SRA/GEO data easier
  ☆33Updated 2 years ago
• abodein / timeOmics
  Time-Course Multi-Omics data integration
  ☆26Updated last year
• rnakato / DROMPAplus
  ChIP-seq pipeline tool for quality check, normalization, statistical analysis, and visualization of multiple ChIP-seq samples.
  ☆24Updated 4 months ago
• cccnrc / plot-VCF
  visual analysis of your VCF files
  ☆38Updated 3 years ago
• Searchlight2 / Searchlight2
  Rapid analysis and visualisation for bulk RNA-seq, psuedo-bulk RNA-seq, GeoMx and Proteomic datasets.
  ☆30Updated last year
• wyguo / ThreeDRNAseq
  A pipeline for differential expression and differential alternative splicing analysis
  ☆67Updated last year
• datapplab / SBGNview
  ☆29Updated 2 years ago
• schatzlab / scikit-ribo
  Accurate estimation and robust modelling of translation dynamics at codon resolution
  ☆22Updated 8 years ago
• 123xiaochen / VCFshiny
  ☆29Updated last year
• mdozmorov / RNA-seq_notes
  A continually expanding collection of RNA-seq tools
  ☆53Updated 3 months ago
• mattheiter / openPrimeR
  An R Package for Multiplex PCR Primer Design and Analysis
  ☆29Updated 6 months ago
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆38Updated last month
• drpowell / degust
  An interactive web-tool for RNA-seq analysis
  ☆70Updated last month
• Sydney-Informatics-Hub / Bioinformatics
  A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common methods.
  ☆18Updated 3 weeks ago
• jianhong / trackViewer.documentation
  documentation for trackViewer
  ☆29Updated 6 years ago
• nf-core / rnasplice
  rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
  ☆63Updated 8 months ago
• dputhier / pygtftk
  A python package and a set of shell commands to handle GTF files
  ☆50Updated 2 weeks ago
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆45Updated last month
• djhn75 / RNAEditor
  ☆15Updated 3 years ago
• ShawnWx2019 / MetMiner
  MetMiner: A user-friendly pipeline for large-scale plant metabolomics data analysis
  ☆17Updated last year
• blekhmanlab / host_gene_microbiome_interactions
  Analysis framework for integrating gut microbiome and host gene expression data
  ☆35Updated 3 years ago
• bjmt / universalmotif
  Motif manipulation functions for R.
  ☆30Updated 4 months ago
• TrinityCTAT / CTAT-VirusIntegrationFinder
  ☆17Updated 5 months ago
• NBISweden / GUESSmyLT
  An efficient way to guess the library type of your RNA-Seq data.
  ☆32Updated 3 years ago
• snystrom / memes
  An R interface to the MEME Suite
  ☆54Updated 3 weeks ago
• ELTEbioinformatics / mulea
  mulea - an R package for enrichment analysis using various ontologies and empirical false discovery rate
  ☆28Updated last week
• YaoLab-Bioinfo / shinyChromosome
  an R/Shiny application for interactive creation of non-circular plots of whole genomes
  ☆45Updated 8 months ago
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆34Updated 7 months ago