datapplab / pathviewLinks
pathway based data integration and visualization
☆41Updated 2 months ago
Alternatives and similar repositories for pathview
Users that are interested in pathview are comparing it to the libraries listed below
Sorting:
- Time-Course Multi-Omics data integration☆25Updated last year
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 4 years ago
- ☆31Updated 4 years ago
- An R interface to the MEME Suite☆50Updated last week
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆20Updated 7 years ago
- Motif manipulation functions for R.☆28Updated 2 months ago
- Reduce + Visualize Gene Ontology☆28Updated 2 months ago
- Rapid analysis and visualisation for bulk RNA-seq, psuedo-bulk RNA-seq, GeoMx and Proteomic datasets.☆28Updated 9 months ago
- ☆33Updated last week
- A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.☆27Updated last year
- 🧬 Gene analysis toolkit based on R☆57Updated 5 months ago
- mulea - an R package for enrichment analysis using various ontologies and empirical false discovery rate☆29Updated 6 months ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- ChIP-seq pipeline tool for quality check, normalization, statistical analysis, and visualization of multiple ChIP-seq samples.☆24Updated 10 months ago
- ☆29Updated 8 months ago
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆45Updated last year
- A shiny package for microbiome functional enrichment analysis☆37Updated 2 months ago
- RNAseq pipeline based on snakemake☆26Updated 2 years ago
- A pipeline for differential expression and differential alternative splicing analysis☆67Updated last year
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆39Updated 2 weeks ago
- A set of Shiny apps to provide interactive enrichment analysis and exploration of results.☆28Updated last week
- Merge fastq files split over lanes☆20Updated 7 years ago
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆26Updated last year
- ☆15Updated 2 years ago
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- Bioinformatics analysis scripts, workflows, general code examples☆55Updated 4 years ago
- Snakemake wrappers for bioinformatics.☆18Updated 2 years ago
- ☆32Updated last year
- ☆28Updated last month
- Workshop • Analysis of RNA-seq data☆36Updated last year