mgtools / PhyloMint
Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species
☆11Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for PhyloMint
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 2 years ago
- ☆14Updated 2 months ago
- ☆23Updated last year
- KEGG Module Evaluation Tool☆26Updated 11 months ago
- Protocol for finding informative protein families and then using them to score omic samples☆17Updated 2 years ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆16Updated 2 weeks ago
- Teaching materials for SymbNET course: from MAGs to GEMs☆13Updated 10 months ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆31Updated 4 years ago
- Plot microbiome time series in parallel☆24Updated last year
- Fast and accurate Average Genome Size and 16S rRNA gene Average Copy Number computation in metagenomic data☆14Updated 3 years ago
- ☆11Updated 3 years ago
- Prophage Activity Estimator☆26Updated 5 months ago
- MAG Circularization Method☆33Updated 2 years ago
- Improvement of metagenome-assembled genomes☆49Updated 4 years ago
- ☆19Updated 3 years ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆29Updated 2 years ago
- ☆15Updated last year
- ☆12Updated 3 years ago
- Population genomics from metagenomes☆11Updated 2 months ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆12Updated 7 months ago
- Hydrocarbon biodegradation gene annotation☆15Updated 2 years ago
- ☆43Updated last year
- MAGinator - Accurate SNV calling and profiling of MAGs☆18Updated 2 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆21Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆29Updated 2 years ago
- ☆35Updated this week
- Accurate and robust inference of microbial growth dynamics from metagenomic sequencing☆18Updated 2 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆22Updated 3 months ago
- ☆45Updated 7 months ago
- metabolic heatmap☆18Updated 5 years ago