mgtools / PhyloMint
Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species
☆12Updated 3 years ago
Alternatives and similar repositories for PhyloMint:
Users that are interested in PhyloMint are comparing it to the libraries listed below
- KEGG Module Evaluation Tool☆28Updated last year
- ☆16Updated 2 months ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆16Updated 3 months ago
- Teaching materials for SymbNET course: from MAGs to GEMs☆13Updated last year
- Protocol for finding informative protein families and then using them to score omic samples☆18Updated 2 years ago
- ☆25Updated last year
- Fast and accurate Average Genome Size and 16S rRNA gene Average Copy Number computation in metagenomic data☆14Updated 2 months ago
- Plot microbiome time series in parallel☆25Updated last year
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Updated 4 years ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆21Updated last year
- Prophage Activity Estimator☆26Updated 8 months ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆12Updated 11 months ago
- MAG Circularization Method☆33Updated 2 years ago
- ☆11Updated last year
- Improvement of metagenome-assembled genomes☆51Updated 4 years ago
- ☆15Updated last year
- Population genomics from metagenomes☆11Updated 5 months ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆31Updated 2 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆43Updated 4 years ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32Updated 4 years ago
- ☆19Updated 4 years ago
- Tool to estimate genome quality of microbial eukaryotes☆36Updated 3 weeks ago
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆15Updated last year
- ☆48Updated 10 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆32Updated 3 years ago
- Ready-to-use pipeline to detect, count and identify the hgcAB genes, involved in mercury methylation, from metagenomes☆10Updated 9 months ago
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…☆15Updated 2 years ago
- The Microbial Co-occurrence Network Explorer☆19Updated last year