aziele / pfam_scanView external linksLinks
A tool for scanning FASTA protein sequences against a library of Pfam HMMs
☆25Aug 23, 2022Updated 3 years ago
Alternatives and similar repositories for pfam_scan
Users that are interested in pfam_scan are comparing it to the libraries listed below
Sorting:
- ☆18Nov 7, 2025Updated 3 months ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Jul 13, 2020Updated 5 years ago
- viralComplete: BLAST-based viral completeness verification☆24Oct 4, 2021Updated 4 years ago
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Aug 2, 2022Updated 3 years ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆16Jan 12, 2026Updated last month
- ☆28Mar 4, 2022Updated 3 years ago
- Pan-3D genome analysis of soybean Hi-C data☆12Mar 6, 2023Updated 2 years ago
- Fast and accurate Average Genome Size and 16S rRNA gene Average Copy Number computation in metagenomic data☆15Dec 20, 2024Updated last year
- ☆11Mar 25, 2019Updated 6 years ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated last year
- Viroid-like circRNA discovery and analysis suite☆18Nov 11, 2023Updated 2 years ago
- Software GMATA for SSR mining, marker designing, genotyping, plot etc.☆17Oct 6, 2025Updated 4 months ago
- ☆17Jan 11, 2026Updated last month
- Some bioinformic domestic scripts.☆35Nov 27, 2022Updated 3 years ago
- Tools for working with WGBS data☆14Jul 3, 2017Updated 8 years ago
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆16Feb 2, 2026Updated 2 weeks ago
- ☆17Nov 26, 2023Updated 2 years ago
- ☆16Jul 25, 2021Updated 4 years ago
- Pathway Tools multiprocessing wrapper (for PathoLogic).☆15Dec 18, 2025Updated last month
- Genome Annotation Pipeline☆43Aug 20, 2024Updated last year
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆17Jan 13, 2026Updated last month
- ☆16Dec 25, 2024Updated last year
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆16Jun 17, 2025Updated 7 months ago
- ☆15Jan 19, 2022Updated 4 years ago
- C program for selecting DNA substitution models using PAUP*☆18Mar 24, 2020Updated 5 years ago
- Raw data and scripts used to benchmark eggnog-mapper. Analysis and additional tests cases are provided as a python notebook.☆20Apr 5, 2017Updated 8 years ago
- ☆17Jan 13, 2024Updated 2 years ago
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆20Nov 25, 2025Updated 2 months ago
- TreeBeST: Tree Building guided by Species Tree (Ensembl Compara modifications)☆21Oct 9, 2019Updated 6 years ago
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆23May 19, 2020Updated 5 years ago
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆19May 16, 2025Updated 9 months ago
- ☆24Apr 22, 2025Updated 9 months ago
- A legacy repository. Was replaced by distiller, cooler, and cooltools.☆21Mar 4, 2020Updated 5 years ago
- Latest MOCAT2 version☆18Mar 8, 2021Updated 4 years ago
- viralFlye pipeline☆18Aug 12, 2024Updated last year
- Run_dbcan V5☆44Feb 4, 2026Updated last week
- Metagenomics-related extended functionalities to samtools☆22Jul 6, 2023Updated 2 years ago
- Structure variants calling and genotyping scripts for pan-Zea☆22Nov 17, 2022Updated 3 years ago
- Protein discovery tool for mining in the Alphafold database based on the position of few amino acids.☆29Jan 16, 2026Updated last month