aziele / pfam_scan
A tool for scanning FASTA protein sequences against a library of Pfam HMMs
☆13Updated 2 years ago
Alternatives and similar repositories for pfam_scan:
Users that are interested in pfam_scan are comparing it to the libraries listed below
- Improved Inference of Ortholog Groups using Hidden Markov Models☆33Updated last month
- ☆17Updated 10 months ago
- ☆17Updated 2 years ago
- An R package to infer and analyze synteny networks from protein sequences☆29Updated 4 months ago
- ☆10Updated last month
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆31Updated 3 weeks ago
- ☆12Updated last year
- Pathway Tools multiprocessing wrapper (for PathoLogic).☆14Updated 2 weeks ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆29Updated last year
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆13Updated 3 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated last week
- a python package for automated generation of phylogenetic trees from genbank files☆21Updated last month
- This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).☆15Updated 5 years ago
- ☆32Updated last year
- A program for detection of tRNA genes☆60Updated 2 years ago
- ☆43Updated last year
- Simple library/pipeline to generate and handle Hi-C data.☆37Updated 5 months ago
- Metagenome analysis using the Kraken software suite☆31Updated 2 years ago
- Scalable Maximum Likelihood Estimation of Phylogenetic Models☆12Updated last month
- showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.☆30Updated 6 years ago
- Mycotools is a compilation of computational biology tools and database (MycotoolsDB/MTDB) software that facilitate large-scale comparativ…☆13Updated 2 weeks ago
- Tiberius is a deep learning gene finder.☆52Updated this week
- ☆26Updated 4 years ago
- STRIDE: Species Tree Root Inference from Gene Duplication Events☆11Updated 6 years ago
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆14Updated 2 years ago
- Annotate sequences from BLAST against KEGG DB with KO numbers and summarize them in KEGG modules.☆22Updated 6 years ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- Pipeline to design taxon-specific primes in defined bacterial communities.☆17Updated 2 months ago
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- viralComplete: BLAST-based viral completeness verification☆24Updated 3 years ago