A tool for scanning FASTA protein sequences against a library of Pfam HMMs
☆29Aug 23, 2022Updated 4 years ago
Alternatives and similar repositories for pfam_scan
Users that are interested in pfam_scan are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆19Nov 7, 2025Updated 11 months ago
- CLI tool to annotate genes with KOfam☆108Oct 17, 2026Updated last week
- ☆19Feb 24, 2026Updated 8 months ago
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Aug 2, 2022Updated 4 years ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆25Sep 25, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆24May 19, 2020Updated 6 years ago
- viralComplete: BLAST-based viral completeness verification☆23Oct 4, 2021Updated 5 years ago
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆23Aug 17, 2026Updated 2 months ago
- An ultra-fast and accurate tool for KEGG Orthology (KO) assignment, powered by deep learning.☆25Aug 24, 2026Updated 2 months ago
- Pipeline of time-ordered gene coexpression network (TO-GCN) construction from three-dimensional (gene expression, condition, and time) da…☆53Jul 13, 2023Updated 3 years ago
- Tools for Gene Expression Quantification in Polyploid Species☆13Sep 29, 2025Updated last year
- Phylommand is a software package to create, manipulate, and/or analyze phylogenetic trees or pairwise alignments.☆11Sep 5, 2024Updated 2 years ago
- Code for NeurIPS 2024 paper "A SARS-CoV-2 Interaction Dataset and VHH Sequence Corpus for Antibody Language Models"☆18Oct 17, 2024Updated 2 years ago
- DomainMapper is a parser for hmmscan full output files built centrally around ECOD domain definitions. Users can optimize DomainMapper's …☆13Dec 13, 2023Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 6 years ago
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆25Dec 20, 2024Updated last year
- A python tool for numerically encoding protein sequences based on PSSM profile☆11Jun 25, 2021Updated 5 years ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆21Jul 13, 2020Updated 6 years ago
- ☆17Feb 27, 2026Updated 8 months ago
- A pipeline to build similarity maps of protein space☆49Aug 18, 2026Updated 2 months ago
- ☆11Mar 25, 2019Updated 7 years ago
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆21Jan 14, 2026Updated 9 months ago
- ☆13Mar 12, 2020Updated 6 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A program for detection of tRNA genes☆93Jul 5, 2026Updated 3 months ago
- Transformer for protein function prediction (version 2)☆14Updated this week
- Pathogenfinder2☆19Apr 20, 2026Updated 6 months ago
- Phylogenomic species tree inference under gene duplication and loss☆13Sep 20, 2026Updated last month
- A Pyrodigal extension to predict genes in RNA viruses.☆12May 3, 2026Updated 5 months ago
- GO2Sum is a deep learning based summarizer that generates human-readable summaries for GO term annotations made by protein function predi…☆17Mar 27, 2024Updated 2 years ago
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated last year
- iTAK☆50Apr 8, 2026Updated 6 months ago
- Centromics: visualing centromeres with multiple omics data☆21Jan 18, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Merge transcriptome read-to-genome alignments into non-redundant transcript models☆20Jan 21, 2026Updated 9 months ago
- A tool for plotting CAFE5 gene family expansion/contraction result☆38Sep 22, 2023Updated 3 years ago
- Long RNA-seq analysis workflow☆23Oct 13, 2025Updated last year
- ☆26May 6, 2024Updated 2 years ago
- Interactive tree visualizations in Python (powered by Vega).☆11Sep 26, 2019Updated 7 years ago
- TreeCmp: comparison of trees in polynomial time☆14Aug 25, 2025Updated last year
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago