aziele / pfam_scanLinks
A tool for scanning FASTA protein sequences against a library of Pfam HMMs
☆21Updated 3 years ago
Alternatives and similar repositories for pfam_scan
Users that are interested in pfam_scan are comparing it to the libraries listed below
Sorting:
- ☆39Updated 2 years ago
- Explore potential Biosynthetic Gene Clusters in plant genomes. This tool is originally sourced from antiSMASH 4.0.☆33Updated last month
- GO KEGG annotation☆38Updated 3 years ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆53Updated last year
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 3 months ago
- A program for detection of tRNA genes☆77Updated 3 years ago
- STRIDE: Species Tree Root Inference from Gene Duplication Events☆11Updated 7 years ago
- Fork of the KaKs_Calculator2.0 project https://sourceforge.net/projects/kakscalculator2☆13Updated 2 years ago
- Pathway Tools multiprocessing wrapper (for PathoLogic).☆14Updated 2 weeks ago
- Mycotools is a compilation of computational biology tools and database (MycotoolsDB/MTDB) software that facilitate large-scale comparativ…☆16Updated 4 months ago
- Some bioinformic domestic scripts.☆35Updated 3 years ago
- NLR annotation tool☆34Updated last year
- An R package to infer and analyze synteny networks from protein sequences☆36Updated 4 months ago
- Run_dbcan V5☆30Updated last month
- ☆11Updated 9 months ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- A program for divvying or partially filtering multiple sequence alignments☆27Updated 6 years ago
- Taxa Insertion by Parsimony☆15Updated 10 months ago
- showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.☆32Updated 6 years ago
- FastOMA is a scalable software package to infer orthology relationship.☆86Updated last week
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆38Updated 2 years ago
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- ☆17Updated 3 weeks ago
- Learning and Aligning Large Protein Families with support of protein language models.☆28Updated this week
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆22Updated 9 months ago
- EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…☆24Updated 2 years ago
- Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.☆17Updated 6 years ago
- Find reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.☆13Updated last year
- A collection of tools to download and process KEGG database☆40Updated 7 years ago
- ☆17Updated 3 years ago