aziele / pfam_scanLinks
A tool for scanning FASTA protein sequences against a library of Pfam HMMs
☆24Updated 3 years ago
Alternatives and similar repositories for pfam_scan
Users that are interested in pfam_scan are comparing it to the libraries listed below
Sorting:
- ☆17Updated 2 years ago
- Explore potential Biosynthetic Gene Clusters in plant genomes. This tool is originally sourced from antiSMASH 4.0.☆34Updated 3 months ago
- ☆39Updated 2 years ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 4 months ago
- Fork of the KaKs_Calculator2.0 project https://sourceforge.net/projects/kakscalculator2☆13Updated 2 years ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆54Updated last year
- ☆11Updated 10 months ago
- Associated code for EvoWeaver publication☆16Updated 8 months ago
- GO KEGG annotation☆39Updated 3 years ago
- A collection of tools to download and process KEGG database☆41Updated 7 years ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆23Updated 3 weeks ago
- Machine-learning-based general bacterial promoter prediction tool.☆53Updated 2 years ago
- Run_dbcan V5☆40Updated this week
- STRIDE: Species Tree Root Inference from Gene Duplication Events☆11Updated 7 years ago
- showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.☆32Updated 6 years ago
- A program for detection of tRNA genes☆82Updated 3 years ago
- Pathway Tools multiprocessing wrapper (for PathoLogic).☆15Updated last month
- NLR annotation tool☆35Updated last year
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆61Updated last year
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Updated last year
- Mycotools is a compilation of computational biology tools and database (MycotoolsDB/MTDB) software that facilitate large-scale comparativ…☆17Updated 5 months ago
- Python bindings for the TaxonKit library☆43Updated 2 weeks ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆70Updated last month
- ☆17Updated 3 years ago
- Learning and Aligning Large Protein Families with support of protein language models.☆30Updated this week
- ☆13Updated 2 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Updated last month
- Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.☆17Updated 6 years ago
- ☆17Updated 2 months ago
- FastOMA is a scalable software package to infer orthology relationship.☆90Updated this week