Alternatives and similar repositories for pfam_scan

Users that are interested in pfam_scan are comparing it to the libraries listed below

• Stephane-S / Simplot_PlusPlus
  ☆35Updated last year
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆36Updated 4 months ago
• josuebarrera / GenEra
  genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.
  ☆52Updated 7 months ago
• almeidasilvaf / syntenet
  An R package to infer and analyze synteny networks from protein sequences
  ☆30Updated 6 months ago
• carnegie / PlantClusterFinder
  ☆17Updated last year
• LKremer / MSA_trimmer
  Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.
  ☆17Updated 6 years ago
• BGQ / ORPA
  Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis
  ☆13Updated last year
• AuReMe / mpwt
  Pathway Tools multiprocessing wrapper (for PathoLogic).
  ☆14Updated 3 months ago
• cfarkas / annotate_my_genomes
  A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes
  ☆30Updated last year
• AlvaroRodriguezDelRio / nov-fams-pipeline
  ☆11Updated 4 months ago
• PlantDr430 / BuscoOrthoPhylo
  Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs
  ☆20Updated 5 years ago
• FlyPythons / KEGGTools
  A collection of tools to download and process KEGG database
  ☆38Updated 7 years ago
• kullrich / kakscalculator2
  Fork of the KaKs_Calculator2.0 project https://sourceforge.net/projects/kakscalculator2
  ☆13Updated 2 years ago
• UCSC-LoweLab / tRNAscan-SE
  A program for detection of tRNA genes
  ☆63Updated 2 years ago
• youngDouble / GO_KEGG_annotation
  GO KEGG annotation
  ☆36Updated 2 years ago
• SegataLab / cmseq
  Set of utilities on sequences and BAM files
  ☆27Updated 3 years ago
• glarue / reciprologs
  Find reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.
  ☆13Updated last year
• fanagislab / EndHiC
  EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…
  ☆23Updated 2 years ago
• Gaius-Augustus / Tiberius
  Tiberius is a deep learning gene finder.
  ☆67Updated last week
• sing-group / ALTER
  ALignment Transformation EnviRonment
  ☆11Updated 7 years ago
• marbl / Primates
  Complete assemblies of non-human primate genomes
  ☆50Updated last month
• jonassibbesen / rpvg
  Method for inferring path posterior probabilities and abundances from pangenome graph read alignments
  ☆56Updated 6 months ago
• salzberg-lab / PSAURON
  PSAURON is a machine learning model for rapid assessment of protein coding gene annotation
  ☆33Updated 3 months ago
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆43Updated last week
• davidemms / STRIDE
  STRIDE: Species Tree Root Inference from Gene Duplication Events
  ☆12Updated 6 years ago
• lauguma / GWideCodeML
  A Python package for testing evolutionary hypotheses in genome-wide approaches.
  ☆31Updated 4 years ago
• gengit / PosiGene
  ☆26Updated 4 years ago
• PalMuc / TransPi
  TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
  ☆27Updated 3 years ago
• koszullab / hicstuff
  Simple library/pipeline to generate and handle Hi-C data.
  ☆38Updated 7 months ago
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆51Updated 2 years ago