Alternatives and similar repositories for pfam_scan

Users that are interested in pfam_scan are comparing it to the libraries listed below

• josuebarrera / GenEra
  genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.
  ☆52Updated 11 months ago
• Stephane-S / Simplot_PlusPlus
  ☆39Updated 2 years ago
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆37Updated last month
• AuReMe / mpwt
  Pathway Tools multiprocessing wrapper (for PathoLogic).
  ☆14Updated 2 months ago
• carnegie / PlantClusterFinder
  ☆17Updated last year
• davidemms / STRIDE
  STRIDE: Species Tree Root Inference from Gene Duplication Events
  ☆11Updated 7 years ago
• chmccarthy / Pangloss
  Pangenome analysis of eukaryotes.
  ☆19Updated 5 years ago
• UCSC-LoweLab / tRNAscan-SE
  A program for detection of tRNA genes
  ☆71Updated 2 years ago
• plantismash / plantismash
  Explore potential Biosynthetic Gene Clusters in plant genomes. This tool is originally sourced from antiSMASH 4.0.
  ☆30Updated this week
• almeidasilvaf / syntenet
  An R package to infer and analyze synteny networks from protein sequences
  ☆33Updated 3 months ago
• cfarkas / annotate_my_genomes
  A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes
  ☆30Updated last year
• xonq / mycotools
  Mycotools is a compilation of computational biology tools and database (MycotoolsDB/MTDB) software that facilitate large-scale comparativ…
  ☆16Updated 2 months ago
• LKremer / MSA_trimmer
  Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.
  ☆17Updated 6 years ago
• gengit / PosiGene
  ☆26Updated 4 years ago
• PAiewsakun / GRAViTy
  ☆17Updated 3 years ago
• youngDouble / GO_KEGG_annotation
  GO KEGG annotation
  ☆38Updated 3 years ago
• fanagislab / EndHiC
  EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…
  ☆24Updated 2 years ago
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆43Updated 2 months ago
• Gaius-Augustus / Tiberius
  Tiberius is a deep learning gene finder.
  ☆78Updated last week
• gene2dis / BugBuster
  Repository for general metagenomics Nextflow pipeline
  ☆23Updated last month
• kullrich / kakscalculator2
  Fork of the KaKs_Calculator2.0 project https://sourceforge.net/projects/kakscalculator2
  ☆13Updated 2 years ago
• SegataLab / cmseq
  Set of utilities on sequences and BAM files
  ☆26Updated 4 years ago
• DessimozLab / FastOMA
  FastOMA is a scalable software package to infer orthology relationship.
  ☆83Updated last week
• PlantDr430 / BuscoOrthoPhylo
  Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs
  ☆20Updated 6 years ago
• xfengnefx / hifiasm-meta
  hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.
  ☆69Updated this week
• AlvaroRodriguezDelRio / nov-fams-pipeline
  ☆11Updated 7 months ago
• LKremer / showTree
  showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.
  ☆32Updated 6 years ago
• balabanmetin / uDance
  ☆42Updated last year
• simonwhelan / Divvier
  A program for divvying or partially filtering multiple sequence alignments
  ☆27Updated 6 years ago
• PlantDr430 / FunFinder_Pangenome
  Data analysis of Funannotate and Orthofinder outputs to Pangenome results
  ☆20Updated 5 years ago