Alternatives and similar repositories for pfam_scan

Users that are interested in pfam_scan are comparing it to the libraries listed below

• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆37Updated 3 months ago
• plantismash / plantismash
  Explore potential Biosynthetic Gene Clusters in plant genomes. This tool is originally sourced from antiSMASH 4.0.
  ☆34Updated 2 months ago
• Stephane-S / Simplot_PlusPlus
  ☆39Updated 2 years ago
• xonq / mycotools
  Mycotools is a compilation of computational biology tools and database (MycotoolsDB/MTDB) software that facilitate large-scale comparativ…
  ☆17Updated 4 months ago
• AlvaroRodriguezDelRio / nov-fams-pipeline
  ☆11Updated 9 months ago
• carnegie / PlantClusterFinder
  ☆17Updated last month
• AuReMe / mpwt
  Pathway Tools multiprocessing wrapper (for PathoLogic).
  ☆14Updated 3 weeks ago
• kullrich / kakscalculator2
  Fork of the KaKs_Calculator2.0 project https://sourceforge.net/projects/kakscalculator2
  ☆13Updated 2 years ago
• ZiyueYang01 / VirID
  VirID: An integrated platform for the discovery and characterization of RNA Viruses
  ☆22Updated 10 months ago
• Gaius-Augustus / learnMSA
  Learning and Aligning Large Protein Families with support of protein language models.
  ☆30Updated this week
• WrightLabScience / EvoWeaver-ExampleCode
  Associated code for EvoWeaver publication
  ☆16Updated 7 months ago
• youngDouble / GO_KEGG_annotation
  GO KEGG annotation
  ☆38Updated 3 years ago
• drboothtj / getphylo
  a python package for automated generation of phylogenetic trees from genbank files
  ☆23Updated last month
• josuebarrera / GenEra
  genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.
  ☆54Updated last year
• LKremer / showTree
  showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.
  ☆32Updated 6 years ago
• nselem / evomining
  ☆12Updated 2 years ago
• BackofenLab / CRISPRidentify
  ☆31Updated last year
• davidemms / STRIDE
  STRIDE: Species Tree Root Inference from Gene Duplication Events
  ☆11Updated 7 years ago
• satoshikawato / gbdraw
  A genome diagram generator for microbes and organelles
  ☆50Updated 3 weeks ago
• ChengPENG-wolf / ViraLM
  Virus Identification
  ☆25Updated 7 months ago
• FlyPythons / KEGGTools
  A collection of tools to download and process KEGG database
  ☆40Updated 7 years ago
• cjneely10 / MetaSanity
  Pipeline for major biological analyses.
  ☆36Updated 3 years ago
• Hocnonsense / vcontact2
  ☆16Updated last year
• BioinformaticsLabAtMUN / Promotech
  Machine-learning-based general bacterial promoter prediction tool.
  ☆52Updated 2 years ago
• timghaly / EcoFoldDB
  Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.
  ☆24Updated 2 months ago
• gem-pasteur / macsyfinder
  MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.
  ☆70Updated 2 weeks ago
• iquasere / KEGGCharter
  A tool for representing genomic potential and transcriptomic expression into KEGG pathways
  ☆60Updated last year
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆29Updated 8 months ago
• BackofenLab / CRISPRcasIdentifier
  Machine learning for accurate identification and classification of CRISPR-Cas systems
  ☆23Updated last year
• songlab-cal / CherryML
  Scalable Maximum Likelihood Estimation of Phylogenetic Models
  ☆19Updated 10 months ago