kavonrtep / danteLinks
Domain based annotation of transposable elements
☆20Updated 3 months ago
Alternatives and similar repositories for dante
Users that are interested in dante are comparing it to the libraries listed below
Sorting:
- Genome alignment and synteny plots☆31Updated 2 years ago
- Multi-genome synteny block visualization tool☆43Updated 7 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆37Updated 2 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆29Updated last week
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- ☆26Updated last year
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆21Updated 4 months ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 6 months ago
- ☆27Updated 4 months ago
- Reduce genome assembly redundancy using shared mapped k-mer method.☆15Updated 4 months ago
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Updated 9 months ago
- A genome assembly assessment pipeline.☆37Updated last year
- ☆10Updated 3 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆23Updated last year
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 6 years ago
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆18Updated 4 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 5 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆17Updated last month
- ☆16Updated 3 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆28Updated 8 months ago
- ☆16Updated 8 months ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- ☆21Updated last year
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆20Updated 3 weeks ago
- ☆28Updated 3 years ago
- FastK based version of Merqury☆28Updated 2 months ago
- ☆41Updated 3 months ago