kavonrtep / danteLinks
Domain based annotation of transposable elements
☆19Updated last month
Alternatives and similar repositories for dante
Users that are interested in dante are comparing it to the libraries listed below
Sorting:
- Genome alignment and synteny plots☆30Updated 2 years ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- ☆25Updated 10 months ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 6 years ago
- Multi-genome synteny block visualization tool☆42Updated 5 months ago
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Updated 7 months ago
- ☆20Updated last week
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- Toolkit for evolutionary analyses of linkage groups☆31Updated 11 months ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 9 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 5 years ago
- Reduce genome assembly redundancy using shared mapped k-mer method.☆15Updated last month
- Robust identification of orthologous Synteny with the Orthology Index☆21Updated last week
- plot genome alignment synteny☆21Updated 5 years ago
- Diploid genome assembly analysis tools☆14Updated 9 months ago
- ☆27Updated 2 months ago
- ☆10Updated last month
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated last year
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- A Hi-C scaffolding method☆23Updated 3 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 4 months ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆12Updated 2 years ago
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- ☆16Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Yet another Hi-C scaffolding tool☆20Updated 8 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆26Updated 3 months ago
- ☆20Updated 10 months ago