d-mcgrath / MetaPathPredict
A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.
☆16Updated 3 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for MetaPathPredict
- ☆23Updated last year
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 2 years ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated last month
- Downstream processing of VAMB binning for Viral Elucidation☆46Updated 4 months ago
- Improvement of metagenome-assembled genomes☆49Updated 4 years ago
- KEGG Module Evaluation Tool☆26Updated last year
- Plot microbiome time series in parallel☆24Updated last year
- MAG Circularization Method☆33Updated 2 years ago
- ☆45Updated 7 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆29Updated 2 years ago
- scripts for microbiome analysis☆11Updated 4 months ago
- Prophage Activity Estimator☆26Updated 5 months ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆38Updated last year
- ☆14Updated last week
- Ready-to-use pipeline to detect, count and identify the hgcAB genes, involved in mercury methylation, from metagenomes☆9Updated 6 months ago
- Hydrocarbon biodegradation gene annotation☆15Updated 2 years ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆30Updated 2 years ago
- Fast and accurate Average Genome Size and 16S rRNA gene Average Copy Number computation in metagenomic data☆14Updated 3 years ago
- Strain Resolution ON Graphs☆47Updated last year
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆21Updated last year
- Discover and annotate the virome☆31Updated last month
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆14Updated 2 weeks ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 2 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆22Updated 4 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆18Updated 8 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆50Updated last week
- ☆43Updated last year
- ☆10Updated last year
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆19Updated last year
- Pipeline for metagenome and metatranscriptome joint assembly☆18Updated last year