Simple Python interface to CoverM's fast coverage estimation functions
☆11Dec 20, 2024Updated last year
Alternatives and similar repositories for pycoverm
Users that are interested in pycoverm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆54May 18, 2026Updated 3 weeks ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆59Mar 27, 2026Updated 2 months ago
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆51May 5, 2026Updated last month
- 🐦 spideog - Command line utility for Kraken2 reports.☆11Nov 30, 2020Updated 5 years ago
- a pipeline to cluster proteins into families☆10Apr 1, 2020Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- 🧬 Efficient parallelized peta-scale protein database search☆39Jan 4, 2024Updated 2 years ago
- Unified Human Gut Virome Catalog☆47May 29, 2026Updated last week
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- Discovery of conserved gene clusters in multiple genomes☆132Jan 16, 2026Updated 4 months ago
- ☆34Oct 6, 2025Updated 8 months ago
- Mistle is a fast spectral search engine. It uses a fragment-indexing technique and SIMD intrinsics to match experimental MS2 spectra to l…☆16Oct 6, 2023Updated 2 years ago
- ☆13Feb 29, 2024Updated 2 years ago
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆23Nov 25, 2025Updated 6 months ago
- Just another minhash implementation.☆12May 28, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Assessing and Improving the quality of metagenomic assemblies☆31Feb 21, 2022Updated 4 years ago
- Python language bindings for bwa☆12Mar 27, 2026Updated 2 months ago
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Apr 23, 2021Updated 5 years ago
- It discovers linear dependent columns and then replaces linear dependent columns with linearly independent columns that span the space o…☆16Jul 4, 2024Updated last year
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆305Feb 3, 2026Updated 4 months ago
- k-mers and the like☆22May 26, 2026Updated 2 weeks ago
- genome_updater is a bash script that downloads and updates (non-redundant) snapshots of the NCBI Genomes repository (RefSeq/GenBank) with…☆170Apr 22, 2026Updated last month
- Drug Resistance Prediction with Reference Graphs☆21Oct 23, 2025Updated 7 months ago
- Faultless AST for Open Biomedical Ontologies.☆28Oct 25, 2025Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Deep Clustering Learning☆12Aug 8, 2019Updated 6 years ago
- exploring viral genome assembly with variation graph tools☆20May 18, 2020Updated 6 years ago
- ☆20Mar 29, 2022Updated 4 years ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆189Mar 17, 2026Updated 2 months ago
- More scalable dereplication for metagenome assembled genomes☆82May 16, 2026Updated 3 weeks ago
- Simple R utilities for working with HMMER☆19Oct 3, 2024Updated last year
- Rust bindings to minimap2 library☆112May 3, 2026Updated last month
- Read alignment statistics for metagenomics☆399Apr 8, 2026Updated 2 months ago
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆31Aug 26, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Fixed-bit collections in Julia☆15Sep 25, 2021Updated 4 years ago
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆16Jun 17, 2025Updated 11 months ago
- Simple terminal alignment viewer☆89Apr 23, 2026Updated last month
- ☆40Dec 16, 2023Updated 2 years ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆253May 13, 2026Updated 3 weeks ago
- A package to annotate protein sequences☆63Feb 23, 2025Updated last year
- Nail is an Alignment Inference tooL☆60May 14, 2026Updated 3 weeks ago