fulcrumgenomics / pybwaLinks
Python language bindings for bwa
☆10Updated last week
Alternatives and similar repositories for pybwa
Users that are interested in pybwa are comparing it to the libraries listed below
Sorting:
- A FASTA/FASTQ format parser library☆20Updated last year
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 5 months ago
- Rust wrapper for the next generation (still currently in C++)☆28Updated 2 weeks ago
- Tumour-only somatic mutation calling using long reads☆27Updated 8 months ago
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- Python wrapper for wavefront alignment using WFA2-lib☆35Updated 7 months ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- Wavefront alignment algorithm (WFA) in Golang☆29Updated 8 months ago
- Benchmarking pairwise aligners☆36Updated 5 months ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 3 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆37Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆43Updated last month
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆51Updated 2 weeks ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆45Updated 9 months ago
- gia: Genomic Interval Arithmetic☆65Updated 10 months ago
- Fast and exact gap-affine partial order alignment☆52Updated this week
- nPoRe: n-Polymer Realigner for improved pileup-based variant calling☆18Updated 3 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last month
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated 2 months ago
- Iterate over minimizers of a DNA sequence☆31Updated last year
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- Singular Genomics Demultiplexing Tool☆16Updated last year
- ☆32Updated 2 years ago
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆16Updated 6 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆25Updated 2 months ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆29Updated 7 months ago
- Rust library for processing sequencing reads.☆25Updated 10 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 7 months ago