chaoszhang / A-proLinks
ASTRAL for PaRalogs and Orthologs
☆21Updated 3 years ago
Alternatives and similar repositories for A-pro
Users that are interested in A-pro are comparing it to the libraries listed below
Sorting:
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆20Updated 2 weeks ago
- Script to help assessing the evolutionary history of a TE family☆16Updated 6 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 7 months ago
- Yet another Hi-C scaffolding tool☆22Updated 11 months ago
- Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clin…☆16Updated 11 months ago
- ☆28Updated last year
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆28Updated 3 weeks ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 7 months ago
- plot genome alignment synteny☆21Updated 5 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 3 weeks ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 6 years ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Updated 5 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- ☆29Updated last year
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆21Updated last year
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆37Updated 2 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- ☆16Updated 4 years ago
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 10 months ago
- Computational Analysis of Gene Expression Evolution☆43Updated last month
- ☆27Updated 6 months ago
- Multi-genome synteny block visualization tool☆47Updated 8 months ago
- ☆38Updated last year
- A genome assembly assessment pipeline.☆37Updated last year
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Updated 5 months ago
- The MafFilter genome alignment processor☆19Updated 4 months ago
- An efficient tool for cross-population fixation index estimation on variant call format files☆10Updated last year
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago