chaoszhang / A-proLinks
ASTRAL for PaRalogs and Orthologs
☆21Updated 3 years ago
Alternatives and similar repositories for A-pro
Users that are interested in A-pro are comparing it to the libraries listed below
Sorting:
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆20Updated 2 months ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Updated 5 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 6 years ago
- Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clin…☆16Updated last year
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 9 months ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated last year
- Multi-genome synteny block visualization tool☆50Updated last month
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Updated 7 months ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 9 months ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Updated 3 months ago
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆14Updated last year
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆29Updated 3 months ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 2 months ago
- ☆28Updated last year
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- plot genome alignment synteny☆21Updated 5 years ago
- Genome alignment and synteny plots☆33Updated 2 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- ☆33Updated 4 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 6 years ago
- ☆16Updated 4 years ago
- Software for detecting introgression using supervised machine learning☆21Updated 3 years ago
- Domain based annotation of transposable elements☆21Updated 2 months ago
- Consensus genome annotation using OMA☆27Updated 5 months ago
- The MafFilter genome alignment processor☆19Updated 6 months ago
- An efficient tool for cross-population fixation index estimation on variant call format files☆10Updated last year
- a broadly applicable tool for automated gene identification and retrieval☆32Updated last year
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Updated 3 years ago