BAMeScience / Mistle
Mistle is a fast spectral search engine. It uses a fragment-indexing technique and SIMD intrinsics to match experimental MS2 spectra to large spectral libraries at a high performance.
☆14Updated last year
Alternatives and similar repositories for Mistle:
Users that are interested in Mistle are comparing it to the libraries listed below
- Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".☆32Updated 2 years ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆26Updated 3 months ago
- ☆20Updated last year
- Python package for processing direct-infusion mass spectrometry-based metabolomics and lipidomics data☆19Updated last year
- Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.☆32Updated this week
- ☆12Updated this week
- Quickly find and score consensus between metabolite identifications and gene annotations☆17Updated 4 months ago
- A python framework for microbial natural products data mining by integrating genomics and metabolomics data☆18Updated 2 weeks ago
- Protein Sequence Annotation with Language Models☆19Updated 6 months ago
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆23Updated last month
- R/Bioconductor package - STRUCT (STatistics in R Using Class Templates) Toolbox☆10Updated 2 months ago
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆21Updated 3 months ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated this week
- ☆16Updated 10 months ago
- LipidLynxX provides the possibility to convert, cross-match, and link various lipid annotations to the tools supporting lipid ontology, …☆14Updated 2 years ago
- Confidence Estimation for Mass Spectrometry Proteomics☆12Updated 10 months ago
- Pipeline to apply encoded Kmer analysis to protein sequences☆16Updated 2 weeks ago
- A web-based "serverless" viewer of QIIME 2 Artifacts and Visualizations☆14Updated last year
- A library for QC report based on MultiQC framework☆14Updated this week
- Bioactive Molecular Networks Project☆14Updated 4 years ago
- Nextflow-powered MS-DIAL☆10Updated 3 months ago
- Tool for reliability assessment of omics peprocessing☆10Updated last year
- Python bindings for the TaxonKit library☆37Updated 2 weeks ago
- Ms2 basEd saMple vectOrization (memo) package☆17Updated last year
- BEAMSpy - Birmingham mEtabolite Annotation for Mass Spectrometry (Python Package)☆17Updated last year
- Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry da…☆28Updated 2 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated 2 weeks ago
- A package to cluster and visualise MS/MS spectral data☆11Updated 4 years ago
- Parser to get meta information from mzML file and parse relevant information to a ISA-Tab structure☆12Updated 7 months ago
- Realtime quality control for mass spectrometry data acquisition☆16Updated 6 months ago