jeanmanguy / spideogLinks
🐦 spideog - Command line utility for Kraken2 reports.
☆11Updated 5 years ago
Alternatives and similar repositories for spideog
Users that are interested in spideog are comparing it to the libraries listed below
Sorting:
- Simple and transparent support for compressed files.☆81Updated 11 months ago
- Rust utility code☆32Updated last year
- A genomic minhashing implementation in Rust☆101Updated 7 months ago
- Rust bindings to minimap2 library☆106Updated 2 weeks ago
- A fast terminal-based viewer and command-line toolkit for molecular sequences (DNA, AA). View, translate, convert (to FASTA), and combine…☆31Updated this week
- Rust bindings to parasail, a SIMD-accelerated pairwise sequence alignment library.☆21Updated 9 years ago
- Alignment-based gene expression quantification☆35Updated 5 months ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated last year
- Parallel Construction of Suffix Arrays in Rust☆26Updated 8 months ago
- Make phylogenetic trees and lineages from the NCBI Taxonomy database☆14Updated 2 years ago
- ☆22Updated 3 years ago
- ☆29Updated last year
- Host depletion optimised for clinical metagenomic sequencing applications☆16Updated last year
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆20Updated 2 years ago
- Fasten toolkit, for streaming operations on fastq files☆81Updated 3 months ago
- ☆57Updated 3 years ago
- FASTA and FASTQ parsing in Rust☆81Updated 10 months ago
- Rust package for constructing and analyzing phylogenies. (unpolished & unmaintained)☆15Updated 8 months ago
- Benchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)☆57Updated 3 years ago
- A SIMD-accelerated library to compute random minimizers☆35Updated last week
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Updated last year
- ☆50Updated 3 years ago
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆20Updated last month
- ☆49Updated 2 years ago
- Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.☆129Updated 5 years ago
- Fast sequence distance estimates☆26Updated last month
- Bioinformatics Algorithms implemented in Rust for Learners☆31Updated 4 years ago
- An ultrafast and memory efficient tool for phylogenomics☆26Updated this week
- Efficient querying of biological databases☆42Updated 3 months ago
- Submit slurm sbatch jobs without a script☆73Updated 5 months ago