π¦ spideog - Command line utility for Kraken2 reports.
β11Nov 30, 2020Updated 5 years ago
Alternatives and similar repositories for spideog
Users that are interested in spideog are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GenePiperβ12Mar 13, 2022Updated 4 years ago
- Mapping NCBI Genbank accession to GTDB accessionβ14Feb 13, 2021Updated 5 years ago
- Simple Python interface to CoverM's fast coverage estimation functionsβ11Dec 20, 2024Updated last year
- Assign taxonomy with blast, can be used for qiimeβ26Mar 25, 2025Updated last year
- β15Feb 7, 2025Updated last year
- Managed Database hosting by DigitalOcean β’ AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A long read simulator based on badread ideaβ23Oct 7, 2022Updated 3 years ago
- Finding prophage regions in bacterial genomes using brute forceβ22Jan 20, 2023Updated 3 years ago
- Transform files to the microtable object with microeco packageβ29May 29, 2026Updated 2 months ago
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)β51May 5, 2026Updated 2 months ago
- Python bindings for the TaxonKit libraryβ43Jul 1, 2026Updated 3 weeks ago
- Resolving Species Level Classification Using Emuβ14Jun 14, 2024Updated 2 years ago
- A set of tools and libraries for automatically generating and initiating sandboxes for Rust programsβ15Oct 24, 2022Updated 3 years ago
- Command line client and Python libraries for CosmosID APIβ13Oct 28, 2025Updated 9 months ago
- R Package for Demographic Modelling Using Projection Matricesβ11Apr 8, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits β’ AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Integrated Machine Learning for Multi-omics Classification and Predictionβ29Jul 13, 2026Updated 2 weeks ago
- β22May 30, 2023Updated 3 years ago
- accessory functions for processing microbial community dataβ12Dec 24, 2022Updated 3 years ago
- A procedural macro to combine multiple configuration methods at compile timeβ12Mar 29, 2023Updated 3 years ago
- workflows for offline analysis of 16S rRNA Nanopore dataβ17Jun 13, 2023Updated 3 years ago
- watt-based inline procedural macrosβ14Jul 17, 2020Updated 6 years ago
- Mutation tracker for microbial genomesβ14Sep 30, 2020Updated 5 years ago
- Moved to https://github.com/dudykr/ddbaseβ16Dec 14, 2023Updated 2 years ago
- β13Oct 17, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Microbiota Analysis in R Easilyβ12Jul 14, 2022Updated 4 years ago
- β12Oct 19, 2024Updated last year
- Experimental Quantum Computer Simulator + Quantum Chess Implementationβ19Jan 4, 2021Updated 5 years ago
- Rust powered background process CLI task managerβ15May 2, 2022Updated 4 years ago
- Construction and analysis of matrix population modelsβ15Mar 28, 2024Updated 2 years ago
- IDE for Rust languageβ20May 17, 2026Updated 2 months ago
- Estimation of isoelectric point of peptides and proteins using support vector machines (SVM).β10Apr 15, 2026Updated 3 months ago
- The Microbiome Interpretable Temporal Rule Engineβ46May 26, 2021Updated 5 years ago
- Swift Phenotypic Analysis of Cellsβ10Jun 8, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A shiny package for microbiome functional enrichment analysisβ42Jul 1, 2026Updated 3 weeks ago
- Step-wise assembly of the neonatal virome modulated by breast feeding.β11Aug 20, 2021Updated 4 years ago
- The Metagenomics-Toolkit is a scalable, data agnostic workflow that automates the analysis of short and long metagenomic reads obtained fβ¦β26Updated this week
- Leviathan: A fast, memory-efficient, and scalable taxonomic and pathway profiler for (pan)genome-resolved metagenomics and metatranscriptβ¦β26Jul 22, 2026Updated last week
- json testing made simpleβ15Aug 30, 2025Updated 10 months ago
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00tβ12Feb 23, 2025Updated last year
- Numerical simulations of physical systems - library and example binariesβ15Mar 21, 2023Updated 3 years ago