Alternatives and similar repositories for spideog:

Users that are interested in spideog are comparing it to the libraries listed below

• markschl / seqtool
  Fast and flexible tool for reading, modifying and writing biological sequences
  ☆17Updated 2 months ago
• esteinig / scrubby
  Host depletion optimised for clinical metagenomic sequencing applications
  ☆14Updated 3 months ago
• hhandika / segul
  An ultrafast and memory efficient tool for phylogenomics
  ☆24Updated last week
• hcdenbakker / colorid
  Experiments with using BIGSI data structure for metagenomic and QC applications
  ☆19Updated 6 months ago
• chfi / waragraph
  ☆27Updated 11 months ago
• 10XGenomics / rust-toolbox
  Rust utility code
  ☆32Updated last year
• Ebedthan / sabreur
  fast, reliable and handy demultiplexing tool for fastx files
  ☆14Updated 11 months ago
• informationsea / bgzip-rs
  bgzip support for Rust
  ☆16Updated last year
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆31Updated last year
• annalam / seqkit
  Toolkit for manipulating FASTA and SAM files
  ☆17Updated 11 months ago
• esteinig / sketchy
  Genomic neighbor typing of bacterial pathogens using MinHash
  ☆44Updated 2 years ago
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆90Updated last month
• ocxtal / udon
  BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing
  ☆20Updated last year
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆27Updated last week
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated 8 months ago
• noamteyssier / ggetrs
  Efficient querying of biological databases
  ☆34Updated last month
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆75Updated last month
• luizirber / niffler
  Simple and transparent support for compressed files.
  ☆76Updated 3 weeks ago
• anp / parasailors
  Rust bindings to parasail, a SIMD-accelerated pairwise sequence alignment library.
  ☆22Updated 8 years ago
• arewebioyet / arewebioyet.github.io
  Rust in bioinformatics and computational biology
  ☆20Updated 2 years ago
• mdsufz / OrtSuite
  Prediction of microbial interactions in complex communities
  ☆12Updated 6 months ago
• shenwei356 / strobemers
  A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)
  ☆14Updated 3 years ago
• wang-q / intspan
  Command line tools for IntSpan related bioinformatics operations
  ☆13Updated last month
• AlexanderLabWHOI / EUKulele
  Automatic eukaryotic taxonomic classification
  ☆28Updated 5 months ago
• larssnip / HumGut
  A healthy human gut genome collection
  ☆22Updated last year
• carolzhou / multiPhATE2
  multiPhATE with comparative genomics
  ☆18Updated 3 years ago
• medvir / VirMet
  Set of tools for viral metagenomics.
  ☆14Updated last week
• onecodex / finch-rs
  A genomic minhashing implementation in Rust
  ☆93Updated last year
• Picani / fastax
  Make phylogenetic trees and lineages from the NCBI Taxonomy database
  ☆13Updated last year