π¦ spideog - Command line utility for Kraken2 reports.
β11Nov 30, 2020Updated 5 years ago
Alternatives and similar repositories for spideog
Users that are interested in spideog are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GenePiperβ12Mar 13, 2022Updated 4 years ago
- Mapping NCBI Genbank accession to GTDB accessionβ14Feb 13, 2021Updated 5 years ago
- Simple Python interface to CoverM's fast coverage estimation functionsβ11Dec 20, 2024Updated last year
- Assign taxonomy with blast, can be used for qiimeβ26Mar 25, 2025Updated last year
- β15Feb 7, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform β’ AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A long read simulator based on badread ideaβ23Oct 7, 2022Updated 3 years ago
- Finding prophage regions in bacterial genomes using brute forceβ22Jan 20, 2023Updated 3 years ago
- Transform files to the microtable object with microeco packageβ29May 29, 2026Updated 3 months ago
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)β52May 5, 2026Updated 4 months ago
- Python bindings for the TaxonKit libraryβ43Aug 3, 2026Updated last month
- Resolving Species Level Classification Using Emuβ14Jun 14, 2024Updated 2 years ago
- A set of tools and libraries for automatically generating and initiating sandboxes for Rust programsβ15Oct 24, 2022Updated 3 years ago
- Command line client and Python libraries for CosmosID APIβ13Oct 28, 2025Updated 10 months ago
- R Package for Demographic Modelling Using Projection Matricesβ11Apr 8, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Integrated Machine Learning for Multi-omics Classification and Predictionβ31Updated this week
- β22May 30, 2023Updated 3 years ago
- Snakemake pipeline for amplicon sequencing using dada2β10Jul 17, 2023Updated 3 years ago
- accessory functions for processing microbial community dataβ12Dec 24, 2022Updated 3 years ago
- A procedural macro to combine multiple configuration methods at compile timeβ12Mar 29, 2023Updated 3 years ago
- workflows for offline analysis of 16S rRNA Nanopore dataβ17Jun 13, 2023Updated 3 years ago
- watt-based inline procedural macrosβ14Jul 17, 2020Updated 6 years ago
- Mutation tracker for microbial genomesβ14Sep 30, 2020Updated 5 years ago
- Moved to https://github.com/dudykr/ddbaseβ16Dec 14, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI β’ AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- β13Oct 17, 2021Updated 4 years ago
- Microbiota Analysis in R Easilyβ12Jul 14, 2022Updated 4 years ago
- β12Oct 19, 2024Updated last year
- Experimental Quantum Computer Simulator + Quantum Chess Implementationβ19Jan 4, 2021Updated 5 years ago
- Construction and analysis of matrix population modelsβ15Mar 28, 2024Updated 2 years ago
- Rust powered background process CLI task managerβ15May 2, 2022Updated 4 years ago
- IDE for Rust languageβ20May 17, 2026Updated 3 months ago
- Estimation of isoelectric point of peptides and proteins using support vector machines (SVM).β10Apr 15, 2026Updated 4 months ago
- The Microbiome Interpretable Temporal Rule Engineβ46May 26, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Swift Phenotypic Analysis of Cellsβ10Jun 8, 2025Updated last year
- A shiny package for microbiome functional enrichment analysisβ42Updated this week
- The Metagenomics-Toolkit is a scalable, data agnostic workflow that automates the analysis of short and long metagenomic reads obtained fβ¦β26Updated this week
- Leviathan: A fast, memory-efficient, and scalable taxonomic and pathway profiler for (pan)genome-resolved metagenomics and metatranscriptβ¦β27Aug 4, 2026Updated last month
- json testing made simpleβ15Aug 30, 2025Updated last year
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00tβ12Feb 23, 2025Updated last year
- Numerical simulations of physical systems - library and example binariesβ15Mar 21, 2023Updated 3 years ago