Alternatives and similar repositories for LinDA:

Users that are interested in LinDA are comparing it to the libraries listed below

• FrederickHuangLin / ANCOM-BC-Code-Archive
  Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …
  ☆30Updated 4 years ago
• victoriapascal / gutsmash
  gutSMASH
  ☆53Updated 2 months ago
• wdl2459 / ConQuR
  Batch effects removal for microbiome data via conditional quantile regression
  ☆27Updated 2 years ago
• waldronlab / curatedMetagenomicDataAnalyses
  Analyses in R and Python Using curatedMetagenomicData
  ☆29Updated 2 months ago
• raeslab / omixer-rpm
  A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.
  ☆26Updated 6 years ago
• thomazbastiaanssen / Tjazi
  A microbiome analysis toolkit for R
  ☆22Updated last year
• segalab / SGVFinder
  ☆32Updated last year
• biocore / DEICODE
  Robust Aitchison PCA from sparse count data
  ☆33Updated 2 years ago
• blekhmanlab / biomehorizon
  Plot microbiome time series in parallel
  ☆25Updated last year
• GraceYoon / SPRING
  Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data
  ☆22Updated 2 years ago
• biobakery / melonnpan
  Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles
  ☆35Updated 11 months ago
• ggloor / ALDEx_bioc
  ALDEx_bioc is the working directory for updating bioconductor
  ☆28Updated 3 weeks ago
• hildebra / lotus2
  Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
  ☆54Updated 2 months ago
• jlw-ecoevo / gRodon
  ☆17Updated 2 years ago
• microsud / dysbiosisR
  The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures
  ☆14Updated 2 years ago
• donia-lab / MetaBGC
  A metagenomic strategy for harnessing the chemical repertoire of the human microbiome
  ☆32Updated last year
• malucalle / selbal
  selbal: selection of balances for microbial signatures
  ☆31Updated 2 weeks ago
• leylabmpi / endoR
  Code and manual of the endoR R-package (Ruaud et al, in preparation).
  ☆12Updated last year
• knightlab-analyses / reference-frames
  ☆20Updated 4 years ago
• HCBravoLab / metagenomeSeq
  Statistical analysis for sparse high-throughput sequencing
  ☆69Updated 2 months ago
• cafferychen777 / MicrobiomeStat
  Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
  ☆37Updated 3 weeks ago
• OSS-Lab / MetQy
  Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)
  ☆18Updated 3 years ago
• biobakery / anpan
  ☆9Updated 2 months ago
• knights-lab / SHOGUN
  SHallow shOtGUN profiler
  ☆53Updated 3 years ago
• borenstein-lab / microbiome-metabolome-curated-data
  ☆63Updated 4 months ago
• twbattaglia / MicrobeDS
  A repository for large-scale microbiome datasets, formatted for phyloseq
  ☆36Updated 11 months ago
• gavinmdouglas / picrust2_manuscript
  ☆22Updated 4 years ago
• Sydney-Informatics-Hub / Shotgun-Metagenomics-Analysis
  Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more
  ☆27Updated last year
• biobakery / maaslin3
  MaAsLin3: Microbiome Multivariate Association with Linear Models
  ☆30Updated this week
• biocore / BIRDMAn
  Bayesian Inferential Regression for Differential Microbiome Analysis
  ☆22Updated last year