steineggerlab / petasearch
🧬 Efficient parallelized peta-scale protein database search
☆41Updated last year
Alternatives and similar repositories for petasearch:
Users that are interested in petasearch are comparing it to the libraries listed below
- Toolkit for manipulating FASTA and SAM files☆17Updated 10 months ago
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆42Updated this week
- Catalogue of pairwise alignment algorithms and benchmarks☆25Updated 5 months ago
- toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files☆22Updated 5 months ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Updated last year
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated 7 months ago
- Nail is an Alignment Inference tooL☆44Updated this week
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆11Updated 7 years ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆44Updated 2 years ago
- A Python interface to gb-io, a fast GenBank parser written in Rust.☆15Updated last week
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Updated 3 years ago
- Reference-guided multiple sequence alignment of viral genomes☆65Updated 3 weeks ago
- k-mer similarity analysis pipeline☆20Updated this week
- map Illumina metagenomes to genomes!☆37Updated 2 months ago
- Fasten toolkit, for streaming operations on fastq files☆77Updated last week
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Updated this week
- Universal and efficient core gene phylogeny with Foldseek and ProstT5☆46Updated last week
- Source code for SimBac, a bacterial genome simulator☆13Updated 4 months ago
- Pipeline for the identification of (coding) gene structures in draft genomes.☆26Updated 8 months ago
- Find common blocks and differences between DNA sequences☆40Updated 2 years ago
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆20Updated 5 months ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆30Updated 2 weeks ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆22Updated last year
- fastest GTF/GFF-to-BED converter chilling around☆22Updated last week
- Python bindings for the TaxonKit library☆34Updated 3 weeks ago
- Build a map of genes present across a set of microbial genomes☆13Updated 3 weeks ago
- multiPhATE with comparative genomics☆18Updated 3 years ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆44Updated 4 months ago
- Approximate nearest neighbour search for microbial genomes based on hash metric☆47Updated this week
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆31Updated 8 months ago