CAMI-challenge / OPALLinks
OPAL: Open-community Profiling Assessment tooL
☆30Updated 11 months ago
Alternatives and similar repositories for OPAL
Users that are interested in OPAL are comparing it to the libraries listed below
Sorting:
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆40Updated last year
- Scalable creating/updating of metagenome profiling databases☆63Updated 6 months ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 11 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆70Updated 3 weeks ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Updated last year
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Updated 2 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆32Updated last year
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated last month
- Protein Alignment and Detection Interface☆60Updated last year
- Trimming tool for Oxford Nanopore sequence data☆22Updated 4 years ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Updated 4 years ago
- Convert genbank files to a swath of other formats☆24Updated 2 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆45Updated this week
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆48Updated last week
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 6 months ago
- Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains☆21Updated last month
- Tutorials on how to use the microGVL to do common bacterial bioinformatic tasks☆25Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- ☆43Updated last year
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- A versatile toolkit for k-mers with taxonomic information☆81Updated 4 months ago
- Generate unique KMERs for every contig in a FASTA file☆48Updated 3 years ago
- ☆26Updated 2 years ago
- NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.☆28Updated 7 months ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- strain-level analysis tools☆39Updated last year