Tools for plotting methylation data in various ways
☆174Feb 24, 2026Updated last week
Alternatives and similar repositories for methylartist
Users that are interested in methylartist are comparing it to the libraries listed below
Sorting:
- Set of tools to manipulate and visualize modified base bam files☆59Aug 2, 2022Updated 3 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Jul 3, 2023Updated 2 years ago
- A bioinformatics tool for working with modified bases☆252Jan 19, 2026Updated last month
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Jul 7, 2025Updated 7 months ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆40Feb 27, 2026Updated last week
- ☆52Sep 27, 2025Updated 5 months ago
- Plotting tools for nanopore methylation data☆95Jul 28, 2025Updated 7 months ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆70Feb 20, 2026Updated last week
- Methylation Phasing for Nanopore Sequencing☆49Mar 5, 2023Updated 3 years ago
- Tandem repeat genotyping with long reads☆35Sep 23, 2025Updated 5 months ago
- Automatic DNA methylation detection from nanopore tools and their consensus model☆79May 22, 2023Updated 2 years ago
- ☆123Feb 22, 2026Updated last week
- Structural variation caller using third generation sequencing☆637Dec 18, 2025Updated 2 months ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆145Nov 24, 2025Updated 3 months ago
- Copy number caller for long read data including SNV utilization☆69Mar 31, 2025Updated 11 months ago
- A tool for somatic structural variant calling using long reads☆162Oct 20, 2025Updated 4 months ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆121Jul 4, 2025Updated 8 months ago
- Methylation/modified base calling separated from basecalling.☆184Sep 17, 2024Updated last year
- Read-based phasing of genomic variants, also called haplotype assembly☆406Dec 31, 2025Updated 2 months ago
- ☆14Sep 11, 2023Updated 2 years ago
- Oxford Nanopore's Basecaller☆800Feb 19, 2026Updated 2 weeks ago
- Evaluating genome assemblies☆115Jan 11, 2026Updated last month
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆161Jan 29, 2026Updated last month
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆106Jun 6, 2021Updated 4 years ago
- De novo tandem repeat calling from PacBio HiFi data☆19Dec 5, 2025Updated 3 months ago
- Error correction of ONT transcript reads☆58Sep 6, 2023Updated 2 years ago
- SV calling for diploid assemblies☆31Mar 22, 2024Updated last year
- Long read based human genomic structural variation detection with cuteSV☆277Sep 30, 2025Updated 5 months ago
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆337Feb 26, 2026Updated last week
- bioinformatics toolkit in rust☆98Feb 15, 2026Updated 2 weeks ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated last year
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 2 months ago
- Somatic structural variant caller for long-read data☆89Updated this week
- PEPPER-Margin-DeepVariant☆257Jan 12, 2024Updated 2 years ago
- Structural Variant Identification Method using Genome Assemblies☆138Sep 16, 2022Updated 3 years ago
- Evaluation and polishing workflows for T2T genome assemblies☆146Jul 7, 2025Updated 7 months ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆54Mar 5, 2025Updated last year
- General purpose utility related to GAF files☆29Jan 27, 2026Updated last month
- Phased assembly variant caller☆134Dec 4, 2024Updated last year