adamewing / tldr
Identify and annotate TE-mediated insertions in long-read sequence data
☆40Updated last year
Related projects: ⓘ
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆21Updated 7 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆53Updated last week
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- ☆23Updated this week
- Transposable Elements MOvement detection using LOng reads☆18Updated last month
- ☆15Updated 3 years ago
- Set of tools to manipulate and visualize modified base bam files☆47Updated 2 years ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆20Updated 4 months ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆23Updated 4 months ago
- A pipeline for isoseq☆23Updated 6 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆20Updated 2 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆28Updated 6 months ago
- ☆29Updated 3 years ago
- ☆14Updated 2 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆24Updated 4 years ago
- ☆17Updated this week
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆17Updated 4 years ago
- ☆31Updated last year
- Algorithm to detect germline and de novo transposon insertions☆26Updated 5 months ago
- Simple library/pipeline to generate and handle Hi-C data.☆36Updated 3 months ago
- ☆23Updated 2 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 3 years ago
- ☆21Updated 3 months ago
- toolkit to process gtf files☆16Updated 2 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆12Updated 5 months ago
- ☆38Updated last week
- methods for orphan gene prediction paper optimization☆25Updated 2 years ago
- Error correction of ONT transcript reads☆57Updated last year
- Scripts to reproduce TrioBinning manuscript☆17Updated 4 years ago
- Updated and optimized fork of BSMAP☆19Updated 3 years ago