adamewing / tldrLinks
Identify and annotate TE-mediated insertions in long-read sequence data
☆42Updated last week
Alternatives and similar repositories for tldr
Users that are interested in tldr are comparing it to the libraries listed below
Sorting:
- Pipeline to identify isoforms from full-length cDNA sequencing data☆25Updated 2 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆29Updated 4 years ago
- ☆36Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated last year
- Simple library/pipeline to generate and handle Hi-C data.☆38Updated 7 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- Transposable Elements MOvement detection using LOng reads☆22Updated last month
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated 2 months ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆28Updated 5 months ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated 2 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆62Updated 2 weeks ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 4 years ago
- ☆19Updated 2 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆61Updated 9 months ago
- Set of tools to manipulate and visualize modified base bam files☆56Updated 2 years ago
- Variant annotation and merging pipeline☆37Updated last month
- Algorithm to detect germline and de novo transposon insertions☆28Updated 3 months ago
- Structural variant merging tool☆52Updated 10 months ago
- ☆33Updated last year
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆28Updated 2 years ago
- ☆22Updated 4 years ago
- python plotly Circos from VCF☆38Updated last year
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 10 months ago
- Long-read Isoform Quantification and Analysis☆38Updated 3 months ago
- Updated and optimized fork of BSMAP☆22Updated 4 years ago
- ☆21Updated 3 months ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago