adamewing / tldrLinks
Identify and annotate TE-mediated insertions in long-read sequence data
☆46Updated 6 months ago
Alternatives and similar repositories for tldr
Users that are interested in tldr are comparing it to the libraries listed below
Sorting:
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Transposable Elements MOvement detection using LOng reads☆25Updated 5 months ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆26Updated 3 months ago
- Simple library/pipeline to generate and handle Hi-C data.☆39Updated last year
- Long-read splice alignment with high accuracy☆64Updated last year
- ☆30Updated 4 years ago
- Set of tools to manipulate and visualize modified base bam files☆58Updated 3 years ago
- Variant annotation and merging pipeline☆41Updated 5 months ago
- Improving gene isoform quantification with miniQuant☆31Updated 3 months ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆52Updated 10 months ago
- A gene fusion caller for long-read transcriptome sequencing data.☆22Updated last year
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated last month
- A pipeline for isoseq☆23Updated 7 years ago
- MEGAnE☆33Updated 2 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆45Updated last year
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆39Updated last month
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated last year
- ☆38Updated 2 years ago
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- ☆36Updated last year
- ☆83Updated 10 months ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆29Updated 6 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆34Updated 5 months ago
- A battery of methylation tools for PacBio HiFi reads☆47Updated last month
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Updated last year
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆72Updated last month
- Structural variant caller☆55Updated 4 years ago