Alternatives and similar repositories for xTea

Users that are interested in xTea are comparing it to the libraries listed below

• tobiasrausch / alfred
  BAM Statistics, Feature Counting and Annotation
  ☆152Updated last month
• CenterForMedicalGeneticsGhent / WisecondorX
  WisecondorX — An evolved WISECONDOR
  ☆109Updated last month
• secastel / phaser
  phasing and Allele Specific Expression from RNA-seq
  ☆117Updated last year
• KCCG / ClinSV
  Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data
  ☆75Updated last year
• FelixKrueger / SNPsplit
  Allele-specific alignment sorting
  ☆61Updated 3 years ago
• cortes-ciriano-lab / savana
  Somatic structural variant caller for long-read data
  ☆87Updated 2 months ago
• genome-in-a-bottle / genome-stratifications
  Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…
  ☆83Updated 3 years ago
• mortazavilab / TranscriptClean
  Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome
  ☆70Updated last year
• Illumina / ExpansionHunterDenovo
  A suite of tools for detecting expansions of short tandem repeats
  ☆83Updated 2 years ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆98Updated 2 years ago
• dnanexus-archive / parliament2
  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
  ☆103Updated 5 years ago
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆115Updated this week
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆103Updated 6 months ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆131Updated last month
• epi2me-labs / modbam2bed
  ☆52Updated 3 months ago
• ENCODE-DCC / long-read-rna-pipeline
  ENCODE long read RNA-seq pipeline
  ☆52Updated 3 years ago
• gymreklab / GangSTR
  A tool for profiling long STRs from short reads
  ☆104Updated 4 years ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆120Updated 3 months ago
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆160Updated 3 months ago
• tderrien / FEELnc
  FEELnc : FlExible Extraction of LncRNA
  ☆93Updated 5 months ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆105Updated 7 months ago
• lh3 / hickit
  TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C
  ☆115Updated last week
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆118Updated 3 months ago
• bergmanlab / drosophila-transposons
  Drosophila transposable element canonical sequences
  ☆29Updated 3 years ago
• odelaneau / shapeit5
  Segmented HAPlotype Estimation and Imputation Tool
  ☆96Updated last month
• epi2me-labs / wf-transcriptomes
  ☆109Updated last month
• lh3 / bedtk
  A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)
  ☆143Updated 4 months ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆83Updated 3 years ago
• EichlerLab / pav
  Phased assembly variant caller
  ☆131Updated last year
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆67Updated 8 months ago