A tool to classify sequences of plasmid or chromosomal origin. A paper describing this tool is available at: https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007781
☆33Jun 17, 2024Updated 2 years ago
Alternatives and similar repositories for PlasClass
Users that are interested in PlasClass are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆23Apr 20, 2023Updated 3 years ago
- Software for prediction of plasmid sequences in metagenomic assemblies☆111Jun 28, 2021Updated 5 years ago
- Plasmid exploration of bacterial genomes☆26Mar 2, 2022Updated 4 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- Bioinformatics tool to find integrons in bacterial genomes☆94May 7, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- plasmidVerify: plasmid contig verification tool☆15Apr 30, 2020Updated 6 years ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆30Mar 25, 2023Updated 3 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆102Updated this week
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated 3 weeks ago
- ☆37Apr 15, 2024Updated 2 years ago
- Predict plasmids from uncorrected long read data☆41Feb 27, 2026Updated 5 months ago
- ☆13Sep 4, 2017Updated 8 years ago
- Estimate metagenomic coverage and sequence diversity☆62Updated this week
- ☆11Sep 16, 2020Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Plasmid annotation pipeline☆17Oct 1, 2025Updated 10 months ago
- Hybrid Assembler for Plasmids☆10Jul 28, 2022Updated 4 years ago
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆15Aug 26, 2024Updated last year
- Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasm…☆52Feb 2, 2021Updated 5 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆34Jul 17, 2026Updated 3 weeks ago
- A taxonomic classifier of plasmids☆29Jul 7, 2021Updated 5 years ago
- Prophage Activity Estimator☆35May 30, 2024Updated 2 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Aug 8, 2022Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- IslandPath standalone software☆38Nov 7, 2023Updated 2 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆16Jun 26, 2018Updated 8 years ago
- code repo for mobileOG-db☆49Jul 30, 2026Updated last week
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50May 18, 2026Updated 2 months ago
- A tool to detect acquired AMR genes directly from long read sequencing data.☆28Jan 31, 2026Updated 6 months ago
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆35Jul 11, 2026Updated 3 weeks ago
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆22Dec 9, 2025Updated 8 months ago
- Detection of pseudogene candidates in bacterial and archaeal genomes.☆53Mar 22, 2024Updated 2 years ago
- ☆15Jul 24, 2026Updated 2 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Reorients assembled microbial sequences☆143Jun 30, 2026Updated last month
- Pipeline for analysing intergenic regions in bacteria☆39Oct 25, 2019Updated 6 years ago
- ☆14Jun 17, 2023Updated 3 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆48Feb 5, 2026Updated 6 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆89Jul 7, 2026Updated last month
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆383Jul 28, 2026Updated last week
- Mass screening of contigs for antimicrobial and virulence genes☆506Jul 17, 2026Updated 3 weeks ago