Shamir-Lab / PlasClassLinks
A tool to classify sequences of plasmid or chromosomal origin. A paper describing this tool is available at: https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007781
☆30Updated last year
Alternatives and similar repositories for PlasClass
Users that are interested in PlasClass are comparing it to the libraries listed below
Sorting:
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 2 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆41Updated 2 years ago
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago
- ☆33Updated last year
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆39Updated 3 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆78Updated last month
- A tool for removing redundant genomes from a set of assemblies☆77Updated last month
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆91Updated 5 months ago
- Prophage Activity Estimator☆28Updated last year
- IslandPath standalone software☆33Updated last year
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated last year
- ☆20Updated last year
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆35Updated last week
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- A python library for predicting phage lifestyle based on genome sequence☆37Updated 2 years ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated last year
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- Taxonomic classification of viruses at Order and Family level☆21Updated 2 years ago
- Discover and annotate the virome☆53Updated last week
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆51Updated last week
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆50Updated last month
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- ☆35Updated last year