A tool to classify sequences of plasmid or chromosomal origin. A paper describing this tool is available at: https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007781
☆35Jun 17, 2024Updated 2 years ago
Alternatives and similar repositories for PlasClass
Users that are interested in PlasClass are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆23Apr 20, 2023Updated 3 years ago
- Plasmid exploration of bacterial genomes☆28Sep 27, 2026Updated last month
- Software for prediction of plasmid sequences in metagenomic assemblies☆111Jun 28, 2021Updated 5 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- Bioinformatics tool to find integrons in bacterial genomes☆95May 7, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A taxonomic classifier of plasmids☆32Jul 7, 2021Updated 5 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆51Sep 4, 2026Updated last month
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…☆12Sep 18, 2024Updated 2 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆103Oct 2, 2026Updated 3 weeks ago
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- Predict plasmids from uncorrected long read data☆41Feb 27, 2026Updated 8 months ago
- ☆39Apr 15, 2024Updated 2 years ago
- Plasmid annotation pipeline☆17Oct 1, 2025Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆39Feb 26, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- PlasMAAG is a tool to recover plasmids and organisms from metagenomic samples☆34Updated this week
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆92Updated this week
- An updated pipeline for pangenome investigation☆378Updated this week
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆129Oct 22, 2026Updated last week
- PlasRAG is a deep learning-based tool specifically designed for analyzing plasmids, which serves two purposes: (1) plasmid property chara…☆10Dec 24, 2025Updated 10 months ago
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated 3 months ago
- A tool for identifying phages and plasmids from metagenomic fragments using deep learning☆43Apr 13, 2021Updated 5 years ago
- Download assembly files from NCBI☆12May 9, 2023Updated 3 years ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆48Sep 9, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆15Aug 26, 2024Updated 2 years ago
- plasmidVerify: plasmid contig verification tool☆15Apr 30, 2020Updated 6 years ago
- Estimate metagenomic coverage and sequence diversity☆64Aug 5, 2026Updated 2 months ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆31Mar 25, 2023Updated 3 years ago
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 5 years ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆189Apr 16, 2025Updated last year
- Hybrid Assembler for Plasmids☆10Jul 28, 2022Updated 4 years ago
- ☆13Sep 4, 2017Updated 9 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Aug 8, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆18Dec 29, 2022Updated 3 years ago
- ☆11Sep 16, 2020Updated 6 years ago
- Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasm…☆53Feb 2, 2021Updated 5 years ago
- Reorients assembled microbial sequences☆145Jun 30, 2026Updated 4 months ago
- ☆26Apr 20, 2023Updated 3 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆33Oct 5, 2026Updated 3 weeks ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆44Jul 23, 2021Updated 5 years ago