Shamir-Lab / PlasClassLinks
A tool to classify sequences of plasmid or chromosomal origin. A paper describing this tool is available at: https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007781
☆32Updated last year
Alternatives and similar repositories for PlasClass
Users that are interested in PlasClass are comparing it to the libraries listed below
Sorting:
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆45Updated 5 months ago
- A tool for removing redundant genomes from a set of assemblies☆78Updated 4 months ago
- ☆33Updated 2 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Updated 4 years ago
- Automated strain separation of low-complexity metagenomes☆52Updated 4 years ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆39Updated last year
- Identify phage regions in bacterial genomes for masking purposes☆33Updated 6 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 3 years ago
- Comparisons of multiple different prophage predictions☆26Updated 3 years ago
- Prophage Activity Estimator☆29Updated last year
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆83Updated last week
- IslandPath standalone software☆34Updated 2 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆52Updated last month
- Downstream processing of VAMB binning for Viral Elucidation☆53Updated last year
- A toolkit for prokaryotic comparative genomics☆51Updated 2 months ago
- ☆20Updated last year
- Recombination-free trees☆63Updated 4 months ago
- Plasmid exploration of bacterial genomes☆23Updated 3 years ago
- Discover and annotate the virome☆58Updated 2 months ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- Taxonomic classification of viruses at Order and Family level☆21Updated 2 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Updated 3 years ago
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- Calculate assocations between genes and traits☆29Updated 10 months ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆35Updated last week
- Split Kmer Analysis☆67Updated 3 years ago
- KEGG Module Evaluation Tool☆32Updated 2 years ago