EnzoAndree / FastMLSTLinks
β‘οΈπ§¬ FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies
β27Updated last week
Alternatives and similar repositories for FastMLST
Users that are interested in FastMLST are comparing it to the libraries listed below
Sorting:
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and meβ¦β22Updated 2 years ago
- π π« Trim, circularise and orient long read bacterial genome assembliesβ25Updated 6 years ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informatβ¦β19Updated last year
- frame-shift correction for long-read (meta)genomicsβ33Updated last year
- Genome size estimation from long read overlapsβ62Updated last month
- Strain-level haplotyping for metagenomes with short or long-reads.β55Updated 6 months ago
- A taxonomic classifier of plasmidsβ28Updated 4 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.β59Updated last year
- Remove human reads from a sequencing runβ40Updated 2 months ago
- A pipeline for bioinformatics analysis of bacterial genomesβ30Updated last week
- Calculate assocations between genes and traitsβ28Updated 7 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genesβ35Updated 6 months ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)β28Updated 3 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigsβ29Updated 2 years ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomesβ25Updated 3 years ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.β31Updated 3 months ago
- Gene-flank analysis toolβ33Updated 10 months ago
- strain-level analysis toolsβ39Updated last year
- Phylogeny Enhanded Prediction of PAN-genomeβ42Updated 5 years ago
- β24Updated 8 months ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes databaseβ42Updated 4 years ago
- Bacterial GWAS analysisβ45Updated 3 months ago
- pipeline for read mapping, snp calling and annotation for bacterial genomesβ13Updated last year
- Interactive, web tool for exploring pan-genome of bacterial strainsβ48Updated 2 years ago
- A script for comparing old vs new versions of genome annotationsβ22Updated 2 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenomeβ50Updated 3 years ago
- Automated strain separation of low-complexity metagenomesβ51Updated 3 years ago
- Discover and annotate the viromeβ53Updated last week
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVGβ21Updated 6 years ago
- MAGScoT - a MAG scoring and refinement toolβ37Updated last year