EnzoAndree / FastMLSTLinks
⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies
☆27Updated last month
Alternatives and similar repositories for FastMLST
Users that are interested in FastMLST are comparing it to the libraries listed below
Sorting:
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆31Updated this week
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- Calculate assocations between genes and traits☆28Updated 8 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆56Updated 7 months ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- Remove human reads from a sequencing run☆40Updated 3 months ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19Updated last year
- ☆24Updated 9 months ago
- ZGA prokaryotic genome assembly and annotation pipeline☆13Updated last year
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated 3 months ago
- Gene-flank analysis tool☆33Updated 10 months ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 8 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Microbial agile accurate SNP Typer☆29Updated last year
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 5 years ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 3 years ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 6 months ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated last year
- Automated strain separation of low-complexity metagenomes☆52Updated 4 years ago
- A script for comparing old vs new versions of genome annotations☆22Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆26Updated last year
- Recombination-free trees☆60Updated 2 months ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Updated last year