EnzoAndree / FastMLSTLinks
⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies
☆24Updated 3 months ago
Alternatives and similar repositories for FastMLST
Users that are interested in FastMLST are comparing it to the libraries listed below
Sorting:
- Bacterial GWAS analysis☆40Updated last week
- Calculate assocations between genes and traits☆23Updated 2 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆29Updated 3 weeks ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- Gene-flank analysis tool☆27Updated 5 months ago
- Genome size estimation from long read overlaps☆56Updated last month
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19Updated last year
- frame-shift correction for long-read (meta)genomics☆33Updated last year
- ZGA prokaryotic genome assembly and annotation pipeline☆12Updated 8 months ago
- Genomewide Epistasis Analysis on Bacteria☆14Updated 3 weeks ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆59Updated 3 months ago
- IslandPath standalone software☆32Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆29Updated 4 months ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆22Updated 2 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 10 months ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated this week
- whole genome MLST analysis☆43Updated 2 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 7 months ago
- Remove human reads from a sequencing run☆40Updated 8 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Updated last month
- Gene Absence Presence Identification tool.☆26Updated 2 months ago
- MAGScoT - a MAG scoring and refinement tool☆35Updated 7 months ago
- Microbial agile accurate SNP Typer☆29Updated last year
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated 10 months ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago