⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies
☆26Jul 10, 2026Updated 3 months ago
Alternatives and similar repositories for FastMLST
Users that are interested in FastMLST are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An easy way of MLSTyping your genomes in R.☆19Dec 21, 2020Updated 5 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆23Mar 8, 2024Updated 2 years ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Aug 5, 2022Updated 4 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 5 years ago
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data☆26May 8, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated 2 years ago
- Finding prophage regions in bacterial genomes using brute force☆22Jan 20, 2023Updated 3 years ago
- A taxonomic classifier of plasmids☆29Jul 7, 2021Updated 5 years ago
- whole genome MLST analysis☆57Jun 17, 2026Updated 3 months ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆27Sep 12, 2024Updated 2 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆33Updated this week
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Feb 1, 2023Updated 3 years ago
- Ultrafast sequence typing and gene detection from NGS raw reads☆20Apr 15, 2021Updated 5 years ago
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆18Dec 29, 2022Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆23Apr 20, 2023Updated 3 years ago
- A simple script to run an alignment with nucmer and visualise its results.☆10Apr 17, 2023Updated 3 years ago
- Nextflow pipeline for generation of phylogenetic trees to be visualized in Auspice.☆11Jan 6, 2026Updated 9 months ago
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆10Mar 10, 2026Updated 7 months ago
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated 2 months ago
- Phigaro is a scalable command-line tool for predicting phages and prophages☆53Jan 8, 2024Updated 2 years ago
- ☆20Sep 16, 2026Updated 3 weeks ago
- Easy-to-use web application for visualization and comparison of genomes in Genbank file☆22May 27, 2022Updated 4 years ago
- Whole genome core alignments from multiple draft genomes☆13Sep 14, 2016Updated 10 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆31Mar 25, 2023Updated 3 years ago
- finding conserved regions in highly diverse genomes☆16May 25, 2026Updated 4 months ago
- Drug Resistance Prediction with Reference Graphs☆21Oct 23, 2025Updated 11 months ago
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆12Sep 30, 2025Updated last year
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆182Aug 10, 2026Updated 2 months ago
- Origin of Chromosomal Replication Assessment. Python tool for the analysis of circular bacterial DNA sequences in order to find their ori…☆18Oct 10, 2025Updated 11 months ago
- Taxonomy classification of viral sequences / contigs☆13Jul 15, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆108Jan 22, 2026Updated 8 months ago
- Plasmid exploration of bacterial genomes☆28Sep 27, 2026Updated last week
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- Rapid determination of appropriate reference genomes.☆103Jan 22, 2025Updated last year
- Antibiotic resistance prediction in minutes☆122Mar 27, 2026Updated 6 months ago
- ARG normalization by mapping to the ARO ontology.☆70Jul 10, 2026Updated 3 months ago
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆38May 21, 2024Updated 2 years ago