β‘οΈπ§¬ FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies
β26Jul 10, 2026Updated 2 months ago
Alternatives and similar repositories for FastMLST
Users that are interested in FastMLST are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An easy way of MLSTyping your genomes in R.β19Dec 21, 2020Updated 5 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performanceβ23Mar 8, 2024Updated 2 years ago
- Plot genome alignment figure using progressiveMauve & genoPlotRβ22Aug 5, 2022Updated 4 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomesβ13Jun 10, 2021Updated 5 years ago
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing dataβ26May 8, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available β’ AdRun AI, ML, and HPC workloads on powerful cloud GPUsβwithout limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informatβ¦β19May 3, 2024Updated 2 years ago
- Finding prophage regions in bacterial genomes using brute forceβ22Jan 20, 2023Updated 3 years ago
- A taxonomic classifier of plasmidsβ29Jul 7, 2021Updated 5 years ago
- whole genome MLST analysisβ56Jun 17, 2026Updated 3 months ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)β27Sep 12, 2024Updated 2 years ago
- A pipeline for bioinformatics analysis of bacterial genomesβ34Jul 17, 2026Updated 2 months ago
- Microbial Genome Circular plotting tool for comparative genomics using Circosβ39Feb 1, 2023Updated 3 years ago
- Ultrafast sequence typing and gene detection from NGS raw readsβ20Apr 15, 2021Updated 5 years ago
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation methodβ18Dec 29, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomesβ23Apr 20, 2023Updated 3 years ago
- A simple script to run an alignment with nucmer and visualise its results.β10Apr 17, 2023Updated 3 years ago
- Nextflow pipeline for generation of phylogenetic trees to be visualized in Auspice.β11Jan 6, 2026Updated 8 months ago
- Visualisation application for Klebsiella genotypes generated by Kleborate.β10Mar 10, 2026Updated 6 months ago
- Finding regions of similarity between plasmidsβ17Jul 15, 2026Updated 2 months ago
- Phigaro is a scalable command-line tool for predicting phages and prophagesβ53Jan 8, 2024Updated 2 years ago
- β20Updated this week
- Easy-to-use web application for visualization and comparison of genomes in Genbank fileβ22May 27, 2022Updated 4 years ago
- Whole genome core alignments from multiple draft genomesβ13Sep 14, 2016Updated 10 years ago
- Proton VPN Special Offer - Get 70% off β’ AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- DeepSig - Predictor of signal peptides in proteins based on deep learningβ31Mar 25, 2023Updated 3 years ago
- finding conserved regions in highly diverse genomesβ16May 25, 2026Updated 3 months ago
- Drug Resistance Prediction with Reference Graphsβ21Oct 23, 2025Updated 10 months ago
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome sizeβ12Sep 30, 2025Updated 11 months ago
- Targeted Detection and Reconstruction of Plasmidsβ22May 7, 2024Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing readsβ36Feb 3, 2021Updated 5 years ago
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structureβ183Aug 10, 2026Updated last month
- Origin of Chromosomal Replication Assessment. Python tool for the analysis of circular bacterial DNA sequences in order to find their oriβ¦β18Oct 10, 2025Updated 11 months ago
- Taxonomy classification of viral sequences / contigsβ13Jul 15, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.β110Jan 22, 2026Updated 7 months ago
- Plasmid exploration of bacterial genomesβ27Mar 2, 2022Updated 4 years ago
- frame-shift correction for long-read (meta)genomicsβ33Dec 11, 2023Updated 2 years ago
- Rapid determination of appropriate reference genomes.β104Jan 22, 2025Updated last year
- Antibiotic resistance prediction in minutesβ122Mar 27, 2026Updated 5 months ago
- ARG normalization by mapping to the ARO ontology.β70Jul 10, 2026Updated 2 months ago
- 𧬠MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotationsβ38May 21, 2024Updated 2 years ago