francesccoll / powerbacgwasLinks
PowerBacGWAS: Power calculations for Bacterial GWAS
β13Updated 3 years ago
Alternatives and similar repositories for powerbacgwas
Users that are interested in powerbacgwas are comparing it to the libraries listed below
Sorting:
- Population analysis PIPEline π π§¬β22Updated 3 weeks ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files, rename fasta files (prefix aβ¦β22Updated 3 months ago
- A high performance tool to identify orthologs and paralogs across genomes.β27Updated 2 years ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.β20Updated 4 years ago
- A microbial genomic analysis pipeline used by the Djordjevic Labβ13Updated 11 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequencesβ63Updated 5 years ago
- Three bacterial GWAS methods all rolled into one easy-to-use R packageβ22Updated last year
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomesβ16Updated 5 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)β41Updated last year
- Phylogeny Enhanded Prediction of PAN-genomeβ43Updated 5 years ago
- Set of utilities on sequences and BAM filesβ26Updated 4 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specieβ¦β39Updated 4 months ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constrβ¦β33Updated 2 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigsβ55Updated 7 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigsβ29Updated 2 years ago
- Quality control plotting for long readsβ10Updated last year
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio readsβ64Updated last week
- MetaCompass: Reference-guided Assembly of Metagenomesβ43Updated 5 months ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical dataβ49Updated last week
- viralComplete: BLAST-based viral completeness verificationβ24Updated 4 years ago
- Gene-flank analysis toolβ36Updated last year
- Microbial agile accurate SNP Typerβ30Updated 2 years ago
- β13Updated 4 years ago
- Build a map of genes present across a set of microbial genomesβ18Updated last week
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.β69Updated 2 months ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.β34Updated 6 months ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencingβ21Updated 2 years ago
- Influenza genome analysis Nextflow workflowβ31Updated 4 months ago
- β30Updated 2 years ago
- β‘οΈπ§¬ FastMLST: A multi-core tool for multilocus sequence typing of draft genome assembliesβ27Updated 2 months ago