PowerBacGWAS: Power calculations for Bacterial GWAS
☆14Feb 2, 2022Updated 4 years ago
Alternatives and similar repositories for powerbacgwas
Users that are interested in powerbacgwas are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SEER, reimplemented in python 🐍🔮☆134Mar 24, 2026Updated 2 months ago
- A Simulator for Bacterial Machine learning and Genome-Wide Association Studies☆22Jul 21, 2021Updated 4 years ago
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆13Feb 9, 2025Updated last year
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆10Jun 13, 2023Updated 2 years ago
- A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.☆18Jan 21, 2026Updated 4 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆16Jun 21, 2023Updated 2 years ago
- zDB: comparative bacterial genomics made easy☆40May 6, 2026Updated 3 weeks ago
- Population analysis PIPEline 🛠🧬☆24Mar 2, 2026Updated 2 months ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- POUTINE: a next-generation homoplasy counting method for genome-wide association studies.☆10Mar 9, 2023Updated 3 years ago
- bioinformatics learning☆13Oct 10, 2023Updated 2 years ago
- ☆12Dec 4, 2023Updated 2 years ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Mar 5, 2018Updated 8 years ago
- Uses cDBG to count unitigs in bacterial populations☆17Feb 15, 2023Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆22Apr 20, 2023Updated 3 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Dec 10, 2024Updated last year
- ☆12Apr 8, 2021Updated 5 years ago
- PCB and gerber files☆13Apr 22, 2022Updated 4 years ago
- transposable element typing pipeline☆19Mar 8, 2024Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- Gene Absence Presence Identification tool.☆27Mar 28, 2025Updated last year
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- SeqSero2☆40Oct 1, 2025Updated 7 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆71Feb 23, 2026Updated 3 months ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆18Jul 16, 2024Updated last year
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Feb 26, 2020Updated 6 years ago
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- ☆21May 6, 2025Updated last year
- ☆22Apr 2, 2015Updated 11 years ago
- Very flexible tools for plotting and analyzing all kinds of RNA structure data☆16May 4, 2026Updated 3 weeks ago
- Codes for the Iso-Seq variant-calling paper☆11Apr 28, 2023Updated 3 years ago
- A snakemake workflow for WGS-based tuberculosis transmission analysis☆20Dec 3, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Automatic Assembly For The Fungi☆26Updated this week
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆17Feb 26, 2026Updated 3 months ago
- Clermont PCR method In-Silico☆25Feb 8, 2024Updated 2 years ago
- Organism-specific interpretation of AMR genotypes☆17Mar 17, 2026Updated 2 months ago
- Recombination-free trees☆68Apr 26, 2026Updated last month
- plasmidVerify: plasmid contig verification tool☆15Apr 30, 2020Updated 6 years ago
- Prophage Activity Estimator☆33May 30, 2024Updated 2 years ago