A pipeline for bioinformatics analysis of bacterial genomes
☆32Apr 26, 2026Updated last week
Alternatives and similar repositories for bohra
Users that are interested in bohra are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Hybrid Assembler for Plasmids☆10Jul 28, 2022Updated 3 years ago
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆35Dec 2, 2024Updated last year
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated 2 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆94Mar 30, 2026Updated last month
- In silico prediction of E. coli serotype, pathotype and shiga toxin subtyping☆65Jun 5, 2025Updated 11 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆13Jun 30, 2023Updated 2 years ago
- Reorients assembled microbial sequences☆137Aug 21, 2025Updated 8 months ago
- A taxonomic classifier of plasmids☆28Jul 7, 2021Updated 4 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Mar 8, 2024Updated 2 years ago
- Host depletion optimised for clinical metagenomic sequencing applications☆17Updated this week
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆26Sep 12, 2024Updated last year
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆25Apr 10, 2026Updated 3 weeks ago
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated last year
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆86Jan 24, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Assemble bacterial isolate genomes from Nanopore reads☆131Jan 22, 2025Updated last year
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Feb 27, 2026Updated 2 months ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- Download assembly files from NCBI☆13May 9, 2023Updated 2 years ago
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆21Dec 9, 2025Updated 4 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Apr 22, 2026Updated 2 weeks ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Jun 26, 2018Updated 7 years ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆14Aug 26, 2024Updated last year
- Plasmid exploration of bacterial genomes☆26Mar 2, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- whole genome MLST analysis☆51Mar 27, 2026Updated last month
- Plasmid and antimicrobial resistance pipeline☆16Apr 30, 2026Updated last week
- Bacterial taxonomy construction and evaluation in R☆16Jan 30, 2024Updated 2 years ago
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆14Updated this week
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆21Apr 20, 2023Updated 3 years ago
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated last year
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆151Jan 9, 2026Updated 3 months ago
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆17Dec 29, 2022Updated 3 years ago
- Extract subsets of ONT (Nanopore) reads based on time☆24Sep 12, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Interactive, web tool for exploring pan-genome of bacterial strains☆50Jan 14, 2026Updated 3 months ago
- Bitpacked sequence trait and implementation☆18Feb 27, 2026Updated 2 months ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 4 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated this week
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆14Jun 12, 2024Updated last year
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- A tool for removing redundant genomes from a set of assemblies☆80Sep 10, 2025Updated 7 months ago