Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram
☆13Mar 10, 2026Updated 7 months ago
Alternatives and similar repositories for locus2genoplotr
Users that are interested in locus2genoplotr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A nextflow pipeline for performing bacterial RNA-Seq data analysis☆14Oct 15, 2026Updated 3 weeks ago
- Easy-to-use web application for visualization and comparison of genomes in Genbank file☆22May 27, 2022Updated 4 years ago
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆18Sep 14, 2021Updated 5 years ago
- A simple script to run an alignment with nucmer and visualise its results.☆10Apr 17, 2023Updated 3 years ago
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆14Apr 30, 2026Updated 6 months ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Mar 18, 2026Updated 7 months ago
- A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concat…☆60May 7, 2026Updated 6 months ago
- Download assembly files from NCBI☆12May 9, 2023Updated 3 years ago
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated 3 months ago
- A taxonomic classifier of plasmids☆32Jul 7, 2021Updated 5 years ago
- Plasmid and antimicrobial resistance pipeline☆16Sep 28, 2026Updated last month
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆18Dec 29, 2022Updated 3 years ago
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆109Dec 11, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…☆14Oct 5, 2021Updated 5 years ago
- Draw pan- and core-genome curves from proteinortho output☆14Oct 26, 2023Updated 3 years ago
- IS mapping software☆59Dec 3, 2021Updated 4 years ago
- Small utility script to submit genomes to PHASTER for phage detection☆26Oct 21, 2021Updated 5 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆29Apr 11, 2018Updated 8 years ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆116Dec 5, 2025Updated 11 months ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆23Mar 8, 2024Updated 2 years ago
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆28May 7, 2026Updated 6 months ago
- A tooL for Prokaryotic Phylogeny And Clustering Analysis☆14Aug 5, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆108Jan 22, 2026Updated 9 months ago
- kMetaShot is an alignment-free taxonomic classifier based on k-mer/minimizer counting for MAGs☆12Oct 5, 2026Updated last month
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆85May 3, 2025Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆23Apr 20, 2023Updated 3 years ago
- Hybrid Assembler for Plasmids☆10Jul 28, 2022Updated 4 years ago
- Find clustered hits from a BLAST search☆153Aug 6, 2026Updated 3 months ago
- A Python package for working with Bactopia☆12Aug 5, 2026Updated 3 months ago
- Detection of pseudogene candidates in bacterial and archaeal genomes.☆53Mar 22, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆21Aug 13, 2026Updated 2 months ago
- A tool for domain based annotation with databases from the Conserved Domains Database☆29May 26, 2026Updated 5 months ago
- Find housekeeping genes in prokaryotic (meta)genomic data☆11Feb 19, 2026Updated 8 months ago
- Scripts for finding restriction-modification systems in bacterial genomes.☆11Nov 9, 2023Updated 2 years ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Aug 5, 2022Updated 4 years ago
- Tool intended to pull out sequences and annotations between insertion sites specified by the user.☆15Apr 10, 2026Updated 6 months ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago