metagenlab / locus2genoplotrLinks
Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram
☆12Updated last year
Alternatives and similar repositories for locus2genoplotr
Users that are interested in locus2genoplotr are comparing it to the libraries listed below
Sorting:
- Discover and annotate the virome☆58Updated 2 months ago
- Phage-Host Interaction Search Tool☆29Updated last year
- ☆28Updated 2 weeks ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆24Updated last year
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Updated last year
- Unified Human Gut Virome Catalog☆40Updated 2 months ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆40Updated last month
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆35Updated this week
- ☆33Updated 2 years ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆26Updated 2 months ago
- ☆12Updated 4 months ago
- frame-shift correction for long-read (meta)genomics☆33Updated 2 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Updated last year
- MAG Circularization Method☆32Updated 2 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆40Updated 3 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated this week
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- A python library for predicting phage lifestyle based on genome sequence☆38Updated 2 years ago
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆39Updated 2 years ago
- ☆38Updated 2 years ago
- ☆24Updated 11 months ago
- Calculate assocations between genes and traits☆29Updated 10 months ago
- UFCG: Universal Fungal Core Genes☆34Updated 5 months ago
- A simple program to classify the lifestyle of phages.☆17Updated 2 years ago
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆32Updated 3 weeks ago
- MAGScoT - a MAG scoring and refinement tool☆41Updated last year
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Updated last year
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago