metagenlab / locus2genoplotrLinks
Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram
☆12Updated 10 months ago
Alternatives and similar repositories for locus2genoplotr
Users that are interested in locus2genoplotr are comparing it to the libraries listed below
Sorting:
- Discover and annotate the virome☆45Updated this week
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆24Updated 9 months ago
- ZGA prokaryotic genome assembly and annotation pipeline☆12Updated 10 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆46Updated last week
- frame-shift correction for long-read (meta)genomics☆34Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Unified Human Gut Virome Catalog☆32Updated last year
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆28Updated 5 months ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆39Updated 8 months ago
- ☆32Updated last year
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆32Updated this week
- Phage-Host Interaction Search Tool☆27Updated last year
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆20Updated 7 months ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 2 years ago
- A python library for predicting phage lifestyle based on genome sequence☆38Updated last year
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated last year
- Calculate assocations between genes and traits☆23Updated 4 months ago
- MAG Circularization Method☆33Updated 3 years ago
- Gene Absence Presence Identification tool.☆26Updated 3 months ago
- Bacterial GWAS analysis☆42Updated last week
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated 3 months ago
- The gview wiki migrated to GitHub.☆11Updated 4 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated this week
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆25Updated 3 weeks ago
- ☆25Updated 5 months ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 6 months ago