metagenlab / locus2genoplotrLinks
Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram
☆11Updated 10 months ago
Alternatives and similar repositories for locus2genoplotr
Users that are interested in locus2genoplotr are comparing it to the libraries listed below
Sorting:
- A simple-to-use tool for visualizing and comparing genome contexts for numerous genomes☆17Updated last year
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆24Updated 8 months ago
- ☆22Updated 5 months ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated last week
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 11 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated last month
- ZGA prokaryotic genome assembly and annotation pipeline☆12Updated 9 months ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 2 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆28Updated 4 months ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- Download assembly files from NCBI☆12Updated 2 years ago
- A script for comparing old vs new versions of genome annotations☆21Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- The gview wiki migrated to GitHub.☆11Updated 4 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 11 months ago
- Bacterial taxonomy construction and evaluation in R☆13Updated last year
- ☆23Updated 4 months ago
- frame-shift correction for long-read (meta)genomics☆33Updated last year
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 6 months ago
- MAGScoT - a MAG scoring and refinement tool☆35Updated 8 months ago
- ☆22Updated 2 years ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19Updated last year
- Resolving Species Level Classification Using Emu☆13Updated last year
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆31Updated last week
- A functional profiler for metagenomes using FracMinHash☆16Updated 4 months ago
- Prokaryotic Pangenome Analysis☆24Updated 3 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated last month