A microbial genomic analysis pipeline used by the Djordjevic Lab
☆13Feb 9, 2025Updated last year
Alternatives and similar repositories for pipelord
Users that are interested in pipelord are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Mar 8, 2024Updated 2 years ago
- Bacterial GWAS analysis☆47Apr 7, 2026Updated last week
- transposable element typing pipeline☆19Mar 8, 2024Updated 2 years ago
- plasmidVerify: plasmid contig verification tool☆15Apr 30, 2020Updated 5 years ago
- Clermont PCR method In-Silico☆25Feb 8, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆38Apr 14, 2022Updated 4 years ago
- PowerBacGWAS: Power calculations for Bacterial GWAS☆13Feb 2, 2022Updated 4 years ago
- Course materials for an introduction to SARS-CoV-2 sequencing data analysis☆14Aug 15, 2024Updated last year
- ☆16Jun 21, 2023Updated 2 years ago
- Population analysis PIPEline 🛠🧬☆23Mar 2, 2026Updated last month
- Pneumococcal Capsular Typing tool for NGS data☆18Apr 6, 2021Updated 5 years ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆24Aug 1, 2025Updated 8 months ago
- AMR/VF LGT focused bacterial genomics analysis workflow☆28Feb 19, 2026Updated last month
- In silico prediction of E. coli serotype, pathotype and shiga toxin subtyping☆65Jun 5, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆137Mar 26, 2026Updated 2 weeks ago
- ☆15Nov 28, 2022Updated 3 years ago
- Bioinformatics tool to find integrons in bacterial genomes☆87May 7, 2025Updated 11 months ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆173Apr 16, 2025Updated 11 months ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Feb 27, 2026Updated last month
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Aug 8, 2022Updated 3 years ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆73Oct 6, 2020Updated 5 years ago
- Archived - please see updated sccmec tool at link below☆13Aug 30, 2024Updated last year
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Dec 5, 2018Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆64Mar 3, 2026Updated last month
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- Infer transmission clusters from SNP and timing data☆16May 20, 2020Updated 5 years ago
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆13Jun 30, 2023Updated 2 years ago
- Interpretative standards for AMR genotypes☆29Mar 24, 2026Updated 3 weeks ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Oct 22, 2024Updated last year
- zDB: comparative bacterial genomics made easy☆40Feb 2, 2026Updated 2 months ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆22Apr 16, 2024Updated last year
- ☆20Jan 23, 2019Updated 7 years ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆14Jun 12, 2024Updated last year
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆25Jul 13, 2023Updated 2 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆33Jul 2, 2024Updated last year
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆70Feb 23, 2026Updated last month
- Intra-species bacterial contamination detection☆25Feb 5, 2026Updated 2 months ago